Protein : Qrob_P0004320.2 Q. robur
Protein Identifier  ? Qrob_P0004320.2 Organism . Name  Quercus robur
Score  75.1 Score Type  egn
Protein Description  (M=5) K02874 - large subunit ribosomal protein L14 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 160  
Kegg Orthology  K02874
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101228516 33 159 + 127 none 76.51 166 96.06 1e-81 50S ribosomal protein L14-like
blastp_kegg lcl|csv:101208680 33 159 + 127 none 76.51 166 96.06 1e-81 50S ribosomal protein L14-like
blastp_kegg lcl|cmo:103484354 34 159 + 126 none 75.00 168 96.03 1e-81 60S ribosomal protein L14 mitochondrial
blastp_kegg lcl|csv:101232101 33 159 + 127 none 76.51 166 96.06 1e-81 50S ribosomal protein L14-like
blastp_kegg lcl|cam:101511813 35 159 + 125 none 75.30 166 96.80 4e-80 50S ribosomal protein L14-like
blastp_kegg lcl|tcc:TCM_011271 35 159 + 125 none 75.30 166 96.80 1e-79 Ribosomal protein L14p/L23e family protein isoform 1
blastp_kegg lcl|vvi:100241180 19 159 + 141 none 84.43 167 85.82 5e-79 50S ribosomal protein L14-like
blastp_kegg lcl|mus:103983529 23 159 + 137 none 81.07 169 81.02 3e-77 50S ribosomal protein HLP mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa012469mg 35 159 + 125 Gaps:2 75.60 168 92.13 8e-75 hypothetical protein
blastp_kegg lcl|pda:103710523 35 159 + 125 none 65.45 191 87.20 3e-73 50S ribosomal protein HLP mitochondrial
blastp_pdb 3pyv_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyt_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyr_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3pyo_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3ms1_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3mrz_K 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3f1h_O 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3f1f_O 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3d5d_O 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_pdb 3d5b_O 40 158 + 119 Gaps:2 99.18 122 55.37 7e-37 mol:protein length:122 50S ribosomal protein L14
blastp_uniprot_sprot sp|Q68W88|RL14_RICTY 40 158 + 119 Gaps:2 99.18 122 58.68 2e-40 50S ribosomal protein L14 OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZCR5|RL14_RICPR 40 158 + 119 Gaps:2 99.18 122 58.68 2e-40 50S ribosomal protein L14 OS Rickettsia prowazekii (strain Madrid E) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q1RHN1|RL14_RICBR 40 158 + 119 Gaps:2 99.18 122 58.68 2e-40 50S ribosomal protein L14 OS Rickettsia bellii (strain RML369-C) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8GVC4|RL14_RICB8 40 158 + 119 Gaps:2 99.18 122 58.68 2e-40 50S ribosomal protein L14 OS Rickettsia bellii (strain OSU 85-389) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q4UMR9|RL14_RICFE 40 158 + 119 Gaps:2 99.18 122 59.50 4e-40 50S ribosomal protein L14 OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8EZK6|RL14_RICCK 40 158 + 119 Gaps:2 99.18 122 59.50 6e-40 50S ribosomal protein L14 OS Rickettsia canadensis (strain McKiel) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A8GPE0|RL14_RICAH 40 158 + 119 Gaps:2 99.18 122 58.68 1e-39 50S ribosomal protein L14 OS Rickettsia akari (strain Hartford) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|Q8UE28|RL14_AGRT5 40 158 + 119 Gaps:2 99.18 122 56.20 1e-39 50S ribosomal protein L14 OS Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|A1ALV1|RL14_PELPD 40 158 + 119 Gaps:2 99.18 122 56.20 2e-39 50S ribosomal protein L14 OS Pelobacter propionicus (strain DSM 2379) GN rplN PE 3 SV 1
blastp_uniprot_sprot sp|C4K2G9|RL14_RICPU 40 158 + 119 Gaps:2 99.18 122 58.68 2e-39 50S ribosomal protein L14 OS Rickettsia peacockii (strain Rustic) GN rplN PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 41 158 118 PF00238 none Ribosomal protein L14p/L23e IPR000218
PANTHER 35 159 125 PTHR11761:SF3 none none none
SUPERFAMILY 41 158 118 SSF50193 none none IPR023571
Phobius 35 159 125 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 12 34 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 35 158 124 G3DSA:2.40.150.20 none none IPR023571
TIGRFAM 41 158 118 TIGR01067 none rplN_bact: ribosomal protein uL14 IPR005745
PANTHER 35 159 125 PTHR11761 none none IPR000218
ProSitePatterns 97 123 27 PS00049 none Ribosomal protein L14 signature. IPR019972

1 Localization

Analysis Start End Length
TMHMM 15 34 19

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting