Protein : Qrob_P0004030.2 Q. robur
Protein Identifier  ? Qrob_P0004030.2 Organism . Name  Quercus robur
Score  75.1 Score Type  egn
Protein Description  (M=2) K02987 - small subunit ribosomal protein S4e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 265  
Kegg Orthology  K02987
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101232332 1 264 + 264 none 100.00 264 94.32 0.0 40S ribosomal protein S4-like
blastp_kegg lcl|vvi:100244922 1 264 + 264 none 100.00 264 93.94 0.0 40S ribosomal protein S4-like
blastp_kegg lcl|cmo:103495135 1 264 + 264 none 100.00 264 94.32 0.0 40S ribosomal protein S4-3
blastp_kegg lcl|cmo:103495134 1 264 + 264 none 100.00 264 94.32 0.0 40S ribosomal protein S4-3
blastp_kegg lcl|pmum:103332827 1 264 + 264 none 100.00 264 93.18 0.0 40S ribosomal protein S4-1
blastp_kegg lcl|cmo:103500084 1 264 + 264 none 100.00 264 93.18 0.0 40S ribosomal protein S4-3-like
blastp_kegg lcl|vvi:100263779 1 264 + 264 none 100.00 264 93.56 0.0 40S ribosomal protein S4-like
blastp_kegg lcl|gmx:100801792 1 264 + 264 none 100.00 264 93.18 0.0 40S ribosomal protein S4-like
blastp_kegg lcl|rcu:RCOM_1439050 1 262 + 262 Gaps:1 100.00 263 94.68 0.0 40S ribosomal protein S4 putative
blastp_kegg lcl|pper:PRUPE_ppa009337mg 1 264 + 264 none 89.19 296 93.18 0.0 hypothetical protein
blastp_pdb 3iz6_D 1 255 + 255 none 96.23 265 89.80 3e-174 mol:protein length:265 40S ribosomal protein S4 (S4e)
blastp_pdb 3u5g_E 1 259 + 259 none 99.23 261 67.18 2e-125 mol:protein length:261 40S ribosomal protein S4-A
blastp_pdb 3u5c_E 1 259 + 259 none 99.23 261 67.18 2e-125 mol:protein length:261 40S ribosomal protein S4-A
blastp_pdb 3izb_D 1 259 + 259 none 99.23 261 67.18 2e-125 mol:protein length:261 40S ribosomal protein rpS4 (S4e)
blastp_pdb 2xzn_W 1 256 + 256 Gaps:2 99.23 260 55.43 8e-99 mol:protein length:260 40S RIBOSOMAL PROTEIN S4
blastp_pdb 2xzm_W 1 256 + 256 Gaps:2 99.23 260 55.43 8e-99 mol:protein length:260 40S RIBOSOMAL PROTEIN S4
blastp_pdb 3kbg_A 36 240 + 205 Gaps:7 93.90 213 34.50 3e-23 mol:protein length:213 30S ribosomal protein S4e
blastp_uniprot_sprot sp|Q8VYK6|RS43_ARATH 1 262 + 262 none 100.00 262 92.37 0.0 40S ribosomal protein S4-3 OS Arabidopsis thaliana GN RPS4D PE 2 SV 2
blastp_uniprot_sprot sp|Q93VH9|RS41_ARATH 1 261 + 261 none 100.00 261 93.10 0.0 40S ribosomal protein S4-1 OS Arabidopsis thaliana GN RPS4A PE 2 SV 1
blastp_uniprot_sprot sp|P46300|RS4_SOLTU 1 264 + 264 none 100.00 264 91.29 0.0 40S ribosomal protein S4 OS Solanum tuberosum GN RPS4 PE 2 SV 1
blastp_uniprot_sprot sp|P49204|RS42_ARATH 1 262 + 262 none 100.00 262 92.37 0.0 40S ribosomal protein S4-2 OS Arabidopsis thaliana GN RPS4B PE 2 SV 4
blastp_uniprot_sprot sp|P46299|RS4_GOSHI 1 262 + 262 none 100.00 262 90.84 1e-178 40S ribosomal protein S4 OS Gossypium hirsutum GN RPS4 PE 2 SV 1
blastp_uniprot_sprot sp|O22424|RS4_MAIZE 1 255 + 255 none 96.23 265 90.59 5e-175 40S ribosomal protein S4 OS Zea mays GN RPS4 PE 2 SV 1
blastp_uniprot_sprot sp|P49398|RS4_ORYSJ 1 255 + 255 none 96.23 265 89.80 1e-173 40S ribosomal protein S4 OS Oryza sativa subsp. japonica GN RPS4 PE 2 SV 3
blastp_uniprot_sprot sp|O81363|RS4_PRUAR 1 255 + 255 Gaps:4 96.17 261 91.24 1e-169 40S ribosomal protein S4 OS Prunus armeniaca GN RPS4 PE 1 SV 1
blastp_uniprot_sprot sp|P47961|RS4_CRIGR 1 262 + 262 none 99.62 263 70.99 2e-136 40S ribosomal protein S4 OS Cricetulus griseus GN RPS4 PE 2 SV 2
blastp_uniprot_sprot sp|Q90YS0|RS4_ICTPU 1 263 + 263 none 100.00 263 69.96 3e-136 40S ribosomal protein S4 OS Ictalurus punctatus GN rps4 PE 2 SV 3
rpsblast_cdd gnl|CDD|177670 1 261 + 261 none 100.00 261 89.27 1e-144 PLN00036 PLN00036 40S ribosomal protein S4 Provisional.
rpsblast_cdd gnl|CDD|185457 1 256 + 256 none 97.71 262 64.06 2e-99 PTZ00118 PTZ00118 40S ribosomal protein S4 Provisional.
rpsblast_cdd gnl|CDD|31660 2 242 + 241 Gaps:2 100.00 241 50.62 1e-83 COG1471 RPS4A Ribosomal protein S4E [Translation ribosomal structure and biogenesis].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 264 263 PTHR11581 none none IPR000876
ProSitePatterns 8 22 15 PS00528 none Ribosomal protein S4e signature. IPR018199
SMART 42 106 65 SM00363 none S4 RNA-binding domain IPR002942
SMART 174 201 28 SM00739 none KOW (Kyprides, Ouzounis, Woese) motif. IPR005824
ProSiteProfiles 42 104 63 PS50889 none S4 RNA-binding domain profile. IPR002942
ProDom 87 176 90 PD002667 none RIBOSOMAL RIBONUCLEOPROTEIN RNA-BINDING 40S S4 S4 S4E 30S ISOFORM X IPR013845
Pfam 47 90 44 PF01479 none S4 domain IPR002942
Pfam 177 210 34 PF00467 none KOW motif IPR005824
Pfam 3 40 38 PF08071 none RS4NT (NUC023) domain IPR013843
PIRSF 1 241 241 PIRSF002116 none none IPR000876
Pfam 94 170 77 PF00900 none Ribosomal family S4e IPR013845

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting