Protein : Qrob_P0002650.2 Q. robur
Protein Identifier  ? Qrob_P0002650.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF08755 - Hemimethylated DNA-binding protein YccV like Gene Prediction Quality  validated
Protein length 

Sequence

Length: 211  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1621770 1 210 + 210 none 62.50 336 82.38 3e-124 DNA binding protein putative
blastp_kegg lcl|pop:POPTR_0010s16900g 1 208 + 208 none 60.82 342 82.69 1e-123 POPTRDRAFT_226220 hypothetical protein
blastp_kegg lcl|cmo:103488481 1 209 + 209 none 61.65 339 79.90 3e-119 uncharacterized LOC103488481
blastp_kegg lcl|fve:101293772 1 210 + 210 Gaps:3 62.16 333 82.61 8e-119 uncharacterized protein LOC101293772
blastp_kegg lcl|vvi:100266199 1 204 + 204 Gaps:2 60.59 340 80.58 1e-117 uncharacterized LOC100266199
blastp_kegg lcl|csv:101203572 1 209 + 209 Gaps:2 61.61 336 80.68 4e-116 uncharacterized LOC101203572
blastp_kegg lcl|pxb:103947222 1 209 + 209 none 65.52 319 79.43 1e-115 uncharacterized LOC103947222
blastp_kegg lcl|tcc:TCM_011602 1 208 + 208 none 60.82 342 82.21 1e-115 UvrB/uvrC motif-containing protein isoform 1
blastp_kegg lcl|atr:s00177p00031030 1 205 + 205 Gaps:1 60.23 342 78.64 1e-113 AMTR_s00177p00031030 hypothetical protein
blastp_kegg lcl|gmx:100794023 1 205 + 205 none 62.69 327 82.93 3e-113 uncharacterized LOC100794023
blastp_uniprot_sprot sp|Q6D6C5|HSPQ_ERWCT 81 170 + 90 Gaps:10 82.35 102 36.90 3e-07 Heat shock protein HspQ OS Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN hspQ PE 3 SV 1
blastp_uniprot_sprot sp|Q5R5S1|FBX21_PONAB 81 162 + 82 Gaps:9 13.37 621 36.14 1e-06 F-box only protein 21 OS Pongo abelii GN FBXO21 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VDH1|FBX21_MOUSE 81 162 + 82 Gaps:9 13.24 627 36.14 1e-06 F-box only protein 21 OS Mus musculus GN Fbxo21 PE 2 SV 1
blastp_uniprot_sprot sp|O94952|FBX21_HUMAN 81 162 + 82 Gaps:9 13.22 628 36.14 1e-06 F-box only protein 21 OS Homo sapiens GN FBXO21 PE 2 SV 2
rpsblast_cdd gnl|CDD|204053 78 182 + 105 Gaps:5 100.00 100 40.00 6e-25 pfam08755 YccV-like Hemimethylated DNA-binding protein YccV like. YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.
rpsblast_cdd gnl|CDD|131152 79 182 + 104 Gaps:4 99.01 101 36.00 2e-22 TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
rpsblast_cdd gnl|CDD|198060 81 175 + 95 Gaps:7 91.84 98 42.22 1e-13 smart00992 YccV-like Hemimethylated DNA-binding protein YccV like. YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.
rpsblast_cdd gnl|CDD|33580 81 175 + 95 Gaps:5 77.59 116 34.44 9e-07 COG3785 COG3785 Uncharacterized conserved protein [Function unknown].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 79 178 100 PF08755 none Hemimethylated DNA-binding protein YccV like IPR011722
SUPERFAMILY 80 176 97 SSF141255 none none IPR011722
SMART 78 182 105 SM00992 none Hemimethylated DNA-binding protein YccV like IPR011722
Coils 50 71 22 Coil none none none
TIGRFAM 79 180 102 TIGR02097 none yccV: hemimethylated DNA binding domain IPR011722
PANTHER 1 210 210 PTHR31350 none none none
Pfam 30 62 33 PF02151 none UvrB/uvrC motif IPR001943
PANTHER 1 210 210 PTHR31350:SF3 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting