Protein : Qrob_P0002090.2 Q. robur
Protein Identifier  ? Qrob_P0002090.2 Organism . Name  Quercus robur
Score  95.7 Score Type  egn
Protein Description  (M=1) PTHR11206:SF75 - MATE EFFLUX FAMILY PROTEIN (PTHR11206:SF75) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 511  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100249871 1 510 + 510 Gaps:10 100.00 500 78.80 0.0 multidrug and toxin extrusion protein 1-like
blastp_kegg lcl|rcu:RCOM_0681960 1 506 + 506 Gaps:8 99.40 503 78.80 0.0 multidrug resistance pump putative
blastp_kegg lcl|pop:POPTR_0010s01500g 1 496 + 496 Gaps:7 98.80 499 78.30 0.0 POPTRDRAFT_804747 hypothetical protein
blastp_kegg lcl|gmx:100785533 1 507 + 507 Gaps:17 100.00 516 73.64 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|tcc:TCM_021242 3 510 + 508 Gaps:12 99.41 507 76.98 0.0 Multidrug and toxin extrusion protein 1
blastp_kegg lcl|cic:CICLE_v10004811mg 1 510 + 510 Gaps:11 100.00 501 75.05 0.0 hypothetical protein
blastp_kegg lcl|cit:102607988 1 510 + 510 Gaps:11 100.00 501 75.05 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|cam:101508596 1 496 + 496 Gaps:6 98.43 510 72.31 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|gmx:100787340 1 510 + 510 Gaps:18 100.00 528 71.40 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|gmx:100798616 1 496 + 496 Gaps:3 98.42 507 72.95 0.0 MATE efflux family protein 5-like
blastp_pdb 3mku_B 76 429 + 354 Gaps:25 74.57 460 24.78 3e-14 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 76 429 + 354 Gaps:25 74.57 460 24.78 3e-14 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 76 429 + 354 Gaps:25 74.57 460 24.78 3e-14 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 76 429 + 354 Gaps:25 74.57 460 24.78 3e-14 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|A4IIS8|S47A1_XENTR 33 510 + 478 Gaps:24 81.18 574 32.83 8e-66 Multidrug and toxin extrusion protein 1 OS Xenopus tropicalis GN slc47a1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 15 487 + 473 Gaps:25 95.38 476 34.14 5e-64 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 19 478 + 460 Gaps:15 93.49 476 31.24 5e-64 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 15 478 + 464 Gaps:19 94.33 476 31.40 1e-63 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 19 487 + 469 Gaps:19 94.54 476 32.22 3e-62 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 19 479 + 461 Gaps:16 92.55 483 30.43 1e-61 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q3V050|S47A2_MOUSE 15 482 + 468 Gaps:19 78.71 573 32.37 2e-58 Multidrug and toxin extrusion protein 2 OS Mus musculus GN Slc47a2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 19 478 + 460 Gaps:20 93.50 477 29.60 8e-58 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q5RFD2|S47A1_PONAB 18 472 + 455 Gaps:19 76.84 570 31.51 1e-57 Multidrug and toxin extrusion protein 1 OS Pongo abelii GN SLC47A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8K0H1|S47A1_MOUSE 17 472 + 456 Gaps:19 77.43 567 30.98 2e-57 Multidrug and toxin extrusion protein 1 OS Mus musculus GN Slc47a1 PE 1 SV 2
rpsblast_cdd gnl|CDD|30880 5 472 + 468 Gaps:21 99.56 455 27.15 2e-44 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|162043 29 385 + 357 Gaps:23 100.00 342 28.65 1e-37 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|179333 12 450 + 439 Gaps:37 94.74 456 25.69 5e-30 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 29 432 + 404 Gaps:9 100.00 161 52.17 3e-23 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 19 487 + 469 Gaps:55 97.84 464 31.50 1e-19 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 8 479 + 472 Gaps:17 96.19 473 35.16 3e-97 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 82 100 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 413 431 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 8 485 478 PTHR11206 none none none
PANTHER 8 485 478 PTHR11206:SF75 none none none
Phobius 1 25 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 60 81 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 292 315 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 223 255 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 278 291 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 437 460 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 101 122 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 376 392 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 461 510 50 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 123 169 47 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 49 59 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 29 440 412 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 26 48 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 432 436 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 316 335 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 198 222 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 256 277 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 357 375 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 193 197 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 170 192 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 393 412 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 265 427 163 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 29 187 159 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 336 356 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 256 278 22
TMHMM 100 122 22
TMHMM 200 222 22
TMHMM 174 196 22
TMHMM 411 433 22
TMHMM 293 315 22
TMHMM 438 460 22
TMHMM 58 80 22
TMHMM 23 45 22
TMHMM 373 390 17
TMHMM 336 358 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting