Protein : Qrob_P0001910.2 Q. robur
Protein Identifier  ? Qrob_P0001910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12859 - U5 snRNP protein, DIM1 family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 143  
Kegg Orthology  K12859
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0007067 mitotic nuclear division A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_006G122000g 1 142 + 142 none 78.89 180 97.89 1e-101 hypothetical protein
blastp_kegg lcl|atr:s00029p00063040 1 142 + 142 none 100.00 142 99.30 1e-101 AMTR_s00029p00063040 hypothetical protein
blastp_kegg lcl|mus:103994492 1 142 + 142 none 100.00 142 99.30 1e-101 thioredoxin-like protein YLS8
blastp_kegg lcl|mus:103990055 1 142 + 142 none 100.00 142 99.30 1e-101 thioredoxin-like protein YLS8
blastp_kegg lcl|vvi:100249310 1 142 + 142 none 100.00 142 99.30 1e-101 thioredoxin-like protein 4A
blastp_kegg lcl|pop:POPTR_0007s07660g 1 142 + 142 none 100.00 142 99.30 1e-101 POPTRDRAFT_813981 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0626720 1 142 + 142 none 100.00 142 99.30 1e-101 mitosis protein dim1 putative
blastp_kegg lcl|gmx:100792141 1 142 + 142 none 100.00 142 99.30 1e-101 thioredoxin-like protein YLS8-like
blastp_kegg lcl|gmx:547722 1 142 + 142 none 100.00 142 99.30 1e-101 DIM GmDIM DIM protein
blastp_kegg lcl|cmo:103497403 1 142 + 142 none 100.00 142 98.59 2e-101 thioredoxin-like protein YLS8
blastp_pdb 1syx_E 1 142 + 142 none 100.00 142 85.92 2e-92 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1syx_C 1 142 + 142 none 100.00 142 85.92 2e-92 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1syx_A 1 142 + 142 none 100.00 142 85.92 2e-92 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1qgv_A 1 142 + 142 none 100.00 142 85.92 2e-92 mol:protein length:142 SPLICEOSOMAL PROTEIN U5-15KD
blastp_pdb 2av4_A 2 142 + 141 none 88.12 160 78.01 3e-82 mol:protein length:160 Thioredoxin-like protein 4A (DIM1)
blastp_pdb 1pqn_A 2 128 + 127 none 100.00 127 85.83 5e-81 mol:protein length:127 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1xbs_A 1 135 + 135 Gaps:2 90.60 149 40.74 6e-34 mol:protein length:149 Dim1-like protein
blastp_pdb 3gix_B 2 135 + 134 Gaps:2 89.93 149 40.30 5e-33 mol:protein length:149 Thioredoxin-like protein 4B
blastp_pdb 3gix_A 2 135 + 134 Gaps:2 89.93 149 40.30 5e-33 mol:protein length:149 Thioredoxin-like protein 4B
blastp_uniprot_sprot sp|Q9FE62|YLS8_ARATH 1 142 + 142 none 100.00 142 97.89 2e-102 Thioredoxin-like protein YLS8 OS Arabidopsis thaliana GN YLS8 PE 2 SV 1
blastp_uniprot_sprot sp|P83877|TXN4A_MOUSE 1 142 + 142 none 100.00 142 85.92 8e-92 Thioredoxin-like protein 4A OS Mus musculus GN Txnl4a PE 2 SV 1
blastp_uniprot_sprot sp|P83876|TXN4A_HUMAN 1 142 + 142 none 100.00 142 85.92 8e-92 Thioredoxin-like protein 4A OS Homo sapiens GN TXNL4A PE 1 SV 1
blastp_uniprot_sprot sp|P87215|DIMI_SCHPO 1 142 + 142 none 100.00 142 75.35 2e-79 Mitosis protein dim1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dim1 PE 1 SV 1
blastp_uniprot_sprot sp|Q75BD8|DIB1_ASHGO 2 139 + 138 none 96.50 143 65.94 2e-66 Spliceosomal protein DIB1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN DIB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q06819|DIB1_YEAST 2 139 + 138 none 96.50 143 63.77 1e-62 Spliceosomal protein DIB1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DIB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q553S5|TXN4A_DICDI 11 142 + 132 none 82.50 160 63.64 2e-62 Thioredoxin-like protein 4A homolog OS Dictyostelium discoideum GN txnl4a PE 3 SV 4
blastp_uniprot_sprot sp|Q6FMI2|DIB1_CANGA 4 139 + 136 none 95.77 142 63.24 1e-60 Spliceosomal protein DIB1 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN DIB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8BUH1|TXN4B_MOUSE 1 142 + 142 Gaps:2 95.30 149 40.14 4e-34 Thioredoxin-like protein 4B OS Mus musculus GN Txnl4b PE 2 SV 2
blastp_uniprot_sprot sp|Q9NX01|TXN4B_HUMAN 1 135 + 135 Gaps:2 90.60 149 40.74 2e-33 Thioredoxin-like protein 4B OS Homo sapiens GN TXNL4B PE 1 SV 1
rpsblast_cdd gnl|CDD|177804 1 142 + 142 none 100.00 142 97.89 2e-81 PLN00410 PLN00410 U5 snRNP protein DIM1 family Provisional.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 142 142 PTHR12052 none none IPR004123
Gene3D 1 142 142 G3DSA:3.40.30.10 none none IPR012336
PIRSF 1 142 142 PIRSF017199 none none IPR004123
SUPERFAMILY 4 137 134 SSF52833 none none IPR012336
Pfam 4 136 133 PF02966 none Mitosis protein DIM1 IPR004123

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting