Protein : Qrob_P0000850.2 Q. robur
Protein Identifier  ? Qrob_P0000850.2 Organism . Name  Quercus robur
Score  49.1 Score Type  egn
Protein Description  (M=2) PTHR12375:SF30 - PROTEIN LUC7 (PTHR12375:SF30) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 233  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0005685 U1 snRNP A ribonucleoprotein complex that contains small nuclear RNA U1.
GO:0006376 mRNA splice site selection Selection of a splice site by components of the assembling spliceosome.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103408735 6 95 + 90 none 36.00 250 95.56 2e-52 putative RNA-binding protein Luc7-like 1
blastp_kegg lcl|cic:CICLE_v10012249mg 6 97 + 92 none 29.30 314 93.48 1e-51 hypothetical protein
blastp_kegg lcl|gmx:100793888 6 95 + 90 none 21.74 414 95.56 5e-51 putative RNA-binding protein Luc7-like 2-like
blastp_kegg lcl|pxb:103932484 6 95 + 90 none 21.63 416 95.56 1e-50 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|pxb:103932463 6 95 + 90 none 21.63 416 95.56 1e-50 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|pxb:103951846 6 95 + 90 none 21.63 416 95.56 1e-50 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|pper:PRUPE_ppa006377mg 6 95 + 90 none 21.74 414 95.56 1e-50 hypothetical protein
blastp_kegg lcl|pmum:103318810 6 95 + 90 none 21.74 414 95.56 1e-50 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|cam:101513457 6 95 + 90 none 21.03 428 94.44 2e-50 putative RNA-binding protein Luc7-like 2-like
blastp_kegg lcl|pvu:PHAVU_008G052700g 6 95 + 90 none 21.74 414 94.44 2e-50 hypothetical protein
blastp_uniprot_sprot sp|Q7TNC4|LC7L2_MOUSE 9 95 + 87 Gaps:3 21.43 392 51.19 2e-19 Putative RNA-binding protein Luc7-like 2 OS Mus musculus GN Luc7l2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y383|LC7L2_HUMAN 9 95 + 87 Gaps:3 21.43 392 51.19 2e-19 Putative RNA-binding protein Luc7-like 2 OS Homo sapiens GN LUC7L2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9CYI4|LUC7L_MOUSE 9 95 + 87 Gaps:3 22.64 371 51.19 5e-19 Putative RNA-binding protein Luc7-like 1 OS Mus musculus GN Luc7l PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQ29|LUC7L_HUMAN 9 95 + 87 Gaps:3 22.64 371 51.19 6e-19 Putative RNA-binding protein Luc7-like 1 OS Homo sapiens GN LUC7L PE 1 SV 1
blastp_uniprot_sprot sp|Q9USM4|LUC7_SCHPO 6 88 + 83 none 31.44 264 44.58 7e-13 U1 snRNP-associated protein usp106 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN usp106 PE 1 SV 1
blastp_uniprot_sprot sp|Q07508|LUC7_YEAST 51 94 + 44 none 16.86 261 63.64 2e-12 Protein LUC7 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN LUC7 PE 1 SV 1
blastp_uniprot_sprot sp|Q5SUF2|LC7L3_MOUSE 9 95 + 87 Gaps:4 19.21 432 38.55 7e-08 Luc7-like protein 3 OS Mus musculus GN Luc7l3 PE 1 SV 1
blastp_uniprot_sprot sp|Q3SX41|LC7L3_BOVIN 9 95 + 87 Gaps:4 19.21 432 38.55 8e-08 Luc7-like protein 3 OS Bos taurus GN LUC7L3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R8W6|LC7L3_PONAB 9 95 + 87 Gaps:4 19.21 432 38.55 9e-08 Luc7-like protein 3 OS Pongo abelii GN LUC7L3 PE 2 SV 1
blastp_uniprot_sprot sp|O95232|LC7L3_HUMAN 9 95 + 87 Gaps:4 19.21 432 38.55 9e-08 Luc7-like protein 3 OS Homo sapiens GN LUC7L3 PE 1 SV 2
rpsblast_cdd gnl|CDD|112027 6 94 + 89 Gaps:2 35.32 252 55.06 3e-28 pfam03194 LUC7 LUC7 N_terminus. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).
rpsblast_cdd gnl|CDD|34799 1 94 + 94 Gaps:2 35.66 258 47.83 3e-14 COG5200 LUC7 U1 snRNP component mediates U1 snRNP association with cap-binding complex [RNA processing and modification].
rpsblast_kog gnl|CDD|36015 6 95 + 90 Gaps:2 27.59 319 63.64 2e-29 KOG0796 KOG0796 KOG0796 Spliceosome subunit [RNA processing and modification].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 105 100 PTHR12375 none none IPR004882
PANTHER 6 105 100 PTHR12375:SF30 none none none
Coils 5 29 25 Coil none none none
Pfam 6 99 94 PF03194 none LUC7 N_terminus IPR004882

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting