Protein : Qrob_P0000840.2 Q. robur
Protein Identifier  ? Qrob_P0000840.2 Organism . Name  Quercus robur
Score  9.0 Score Type  egn
Protein Description  (M=2) PTHR12375:SF30 - PROTEIN LUC7 (PTHR12375:SF30) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 186  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003729 mRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
GO:0005685 U1 snRNP A ribonucleoprotein complex that contains small nuclear RNA U1.
GO:0006376 mRNA splice site selection Selection of a splice site by components of the assembling spliceosome.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101247022 1 173 + 173 none 43.25 400 86.71 3e-95 putative RNA-binding protein Luc7-like 1-like
blastp_kegg lcl|sot:102579947 1 173 + 173 none 42.82 404 86.71 5e-95 putative RNA-binding protein Luc7-like 2-like
blastp_kegg lcl|pda:103708577 1 177 + 177 none 41.84 423 80.23 2e-91 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|pvu:PHAVU_008G052700g 1 173 + 173 none 41.79 414 91.33 2e-91 hypothetical protein
blastp_kegg lcl|tcc:TCM_025128 1 173 + 173 none 41.89 413 90.75 7e-91 RNA-binding protein Luc7-like 1 isoform 1
blastp_kegg lcl|pda:103714835 1 173 + 173 Gaps:1 41.04 424 81.61 2e-90 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|mus:103990792 1 177 + 177 Gaps:1 42.58 418 78.65 3e-90 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|vvi:100254714 1 173 + 173 none 41.29 419 93.06 5e-90 putative RNA-binding protein Luc7-like 2
blastp_kegg lcl|cic:CICLE_v10012249mg 1 173 + 173 none 55.10 314 91.33 7e-90 hypothetical protein
blastp_kegg lcl|mus:103975206 1 173 + 173 Gaps:1 74.36 234 78.74 3e-89 luc7-like protein
blastp_uniprot_sprot sp|Q9CYI4|LUC7L_MOUSE 1 182 + 182 Gaps:28 45.28 371 32.74 2e-09 Putative RNA-binding protein Luc7-like 1 OS Mus musculus GN Luc7l PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQ29|LUC7L_HUMAN 1 182 + 182 Gaps:28 45.28 371 33.33 2e-09 Putative RNA-binding protein Luc7-like 1 OS Homo sapiens GN LUC7L PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y383|LC7L2_HUMAN 1 182 + 182 Gaps:28 42.86 392 30.95 4e-08 Putative RNA-binding protein Luc7-like 2 OS Homo sapiens GN LUC7L2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7TNC4|LC7L2_MOUSE 1 182 + 182 Gaps:28 42.86 392 30.36 9e-08 Putative RNA-binding protein Luc7-like 2 OS Mus musculus GN Luc7l2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5SUF2|LC7L3_MOUSE 2 117 + 116 none 26.85 432 27.59 6e-06 Luc7-like protein 3 OS Mus musculus GN Luc7l3 PE 1 SV 1
rpsblast_cdd gnl|CDD|112027 1 117 + 117 Gaps:4 45.63 252 38.26 4e-17 pfam03194 LUC7 LUC7 N_terminus. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).
rpsblast_kog gnl|CDD|36015 1 117 + 117 Gaps:4 35.42 319 34.51 3e-13 KOG0796 KOG0796 KOG0796 Spliceosome subunit [RNA processing and modification].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 77 98 22 Coil none none none
PANTHER 160 173 14 PTHR12375 none none IPR004882
PANTHER 1 95 95 PTHR12375 none none IPR004882
PANTHER 160 173 14 PTHR12375:SF30 none none none
PANTHER 1 95 95 PTHR12375:SF30 none none none
Coils 15 36 22 Coil none none none
Pfam 1 93 93 PF03194 none LUC7 N_terminus IPR004882

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting