Protein : Qrob_P0000030.2 Q. robur
Protein Identifier  ? Qrob_P0000030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=89) 3.1.1.11 - Pectinesterase. Code Enzyme  EC:3.1.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 220  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0030599 pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
GO:0042545 cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1393670 1 188 + 188 Gaps:6 47.47 396 65.43 2e-66 Pectinesterase-1 precursor putative (EC:3.1.1.11)
blastp_kegg lcl|fve:101311991 1 188 + 188 Gaps:4 46.38 414 60.94 9e-65 probable pectinesterase 8-like
blastp_kegg lcl|vvi:100241515 1 188 + 188 Gaps:7 48.11 397 60.73 3e-63 probable pectinesterase 8-like
blastp_kegg lcl|mdm:103441432 1 188 + 188 Gaps:7 47.87 399 59.69 3e-62 probable pectinesterase 8
blastp_kegg lcl|pxb:103941111 1 188 + 188 Gaps:7 47.87 399 59.16 4e-62 probable pectinesterase 8
blastp_kegg lcl|pmum:103328997 1 188 + 188 Gaps:5 47.46 394 56.68 5e-62 probable pectinesterase 8
blastp_kegg lcl|pper:PRUPE_ppa006779mg 1 188 + 188 Gaps:4 47.59 395 55.85 2e-61 hypothetical protein
blastp_kegg lcl|tcc:TCM_002054 1 188 + 188 Gaps:1 47.73 396 59.79 2e-59 Pectinesterase
blastp_kegg lcl|gmx:100806629 18 188 + 171 Gaps:3 43.54 395 59.30 1e-56 probable pectinesterase 8-like
blastp_kegg lcl|cic:CICLE_v10011953mg 1 188 + 188 Gaps:16 45.95 383 60.80 1e-55 hypothetical protein
blastp_pdb 1gq8_A 93 188 + 96 none 30.09 319 36.46 4e-11 mol:protein length:319 PECTINESTERASE
blastp_uniprot_sprot sp|O23038|PME8_ARATH 65 188 + 124 Gaps:1 31.81 393 59.20 2e-45 Probable pectinesterase 8 OS Arabidopsis thaliana GN PME8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZQA3|PME15_ARATH 73 187 + 115 none 28.26 407 45.22 1e-24 Probable pectinesterase 15 OS Arabidopsis thaliana GN PME15 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZQA4|PME14_ARATH 90 187 + 98 none 29.43 333 44.90 1e-16 Putative pectinesterase 14 OS Arabidopsis thaliana GN PME14 PE 2 SV 1
blastp_uniprot_sprot sp|O80722|PME4_ARATH 95 187 + 93 Gaps:2 16.16 588 41.05 4e-13 Pectinesterase 4 OS Arabidopsis thaliana GN PME4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5MFV8|PME5_ARATH 95 187 + 93 Gaps:2 15.97 595 42.11 9e-13 Pectinesterase 5 OS Arabidopsis thaliana GN PME5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LPF3|PME68_ARATH 21 187 + 167 Gaps:25 44.20 362 36.88 2e-12 Probable pectinesterase 68 OS Arabidopsis thaliana GN PME68 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VYZ3|PME53_ARATH 102 187 + 86 Gaps:6 24.02 383 40.22 2e-12 Probable pectinesterase 53 OS Arabidopsis thaliana GN PME53 PE 2 SV 1
blastp_uniprot_sprot sp|P41510|PME_BRANA 95 187 + 93 Gaps:2 16.27 584 42.11 7e-12 Probable pectinesterase/pectinesterase inhibitor OS Brassica napus GN BP19 PE 2 SV 1
blastp_uniprot_sprot sp|Q42608|PME_BRACM 95 187 + 93 Gaps:2 16.64 571 42.11 7e-12 Pectinesterase/pectinesterase inhibitor (Fragment) OS Brassica campestris PE 2 SV 1
blastp_uniprot_sprot sp|O81301|PME40_ARATH 93 188 + 96 none 18.53 518 35.42 1e-11 Probable pectinesterase/pectinesterase inhibitor 40 OS Arabidopsis thaliana GN PME40 PE 2 SV 1
rpsblast_cdd gnl|CDD|177939 19 188 + 170 Gaps:1 45.12 379 59.65 2e-65 PLN02304 PLN02304 probable pectinesterase.
rpsblast_cdd gnl|CDD|178286 102 187 + 86 Gaps:6 24.93 369 42.39 1e-19 PLN02682 PLN02682 pectinesterase family protein.
rpsblast_cdd gnl|CDD|178241 92 187 + 96 Gaps:8 28.41 359 47.06 3e-17 PLN02634 PLN02634 probable pectinesterase.
rpsblast_cdd gnl|CDD|178372 93 187 + 95 Gaps:10 33.12 317 39.05 1e-15 PLN02773 PLN02773 pectinesterase.
rpsblast_cdd gnl|CDD|178270 95 187 + 93 Gaps:1 25.14 366 32.61 2e-15 PLN02665 PLN02665 pectinesterase family protein.
rpsblast_cdd gnl|CDD|201593 95 187 + 93 Gaps:8 31.21 298 39.78 2e-15 pfam01095 Pectinesterase Pectinesterase.
rpsblast_cdd gnl|CDD|178276 86 187 + 102 Gaps:8 30.64 359 40.00 1e-14 PLN02671 PLN02671 pectinesterase.
rpsblast_cdd gnl|CDD|177833 95 187 + 93 Gaps:4 26.18 340 40.45 3e-13 PLN02176 PLN02176 putative pectinesterase.
rpsblast_cdd gnl|CDD|177848 98 187 + 90 Gaps:2 15.65 588 42.39 3e-13 PLN02197 PLN02197 pectinesterase.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 93 187 95 G3DSA:2.160.20.10 none none IPR012334
Phobius 35 55 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 95 188 94 PF01095 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Pectinesterase IPR000070
Phobius 20 34 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 56 219 164 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 92 188 97 SSF51126 none none IPR011050
PANTHER 95 188 94 PTHR31321 none none none
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

4 Localization

Analysis Start End Length
TMHMM 7 24 17
SignalP_GRAM_POSITIVE 1 19 18
SignalP_EUK 1 19 18
TMHMM 34 56 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 1 0.947 0.071 NON-PLANT 19