Protein : Qrob_P0000020.2 Q. robur
Protein Identifier  ? Qrob_P0000020.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=89) 3.1.1.11 - Pectinesterase. Code Enzyme  EC:3.1.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 396  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0030599 pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
GO:0042545 cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1393670 4 395 + 392 Gaps:8 99.49 396 73.86 0.0 Pectinesterase-1 precursor putative (EC:3.1.1.11)
blastp_kegg lcl|fve:101311991 1 395 + 395 Gaps:10 96.86 414 71.57 0.0 probable pectinesterase 8-like
blastp_kegg lcl|cic:CICLE_v10011953mg 4 395 + 392 Gaps:18 99.74 383 70.42 0.0 hypothetical protein
blastp_kegg lcl|vvi:100241515 11 394 + 384 Gaps:7 98.49 397 70.84 0.0 probable pectinesterase 8-like
blastp_kegg lcl|cit:102626812 4 395 + 392 Gaps:18 99.74 383 70.42 0.0 probable pectinesterase 8-like
blastp_kegg lcl|tcc:TCM_002054 14 395 + 382 Gaps:5 97.73 396 71.06 0.0 Pectinesterase
blastp_kegg lcl|pmum:103328997 4 392 + 389 Gaps:11 98.98 394 70.26 0.0 probable pectinesterase 8
blastp_kegg lcl|pper:PRUPE_ppa006779mg 4 392 + 389 Gaps:10 98.99 395 70.33 0.0 hypothetical protein
blastp_kegg lcl|pxb:103941111 13 392 + 380 Gaps:7 96.99 399 70.80 0.0 probable pectinesterase 8
blastp_kegg lcl|mdm:103441432 13 392 + 380 Gaps:7 96.99 399 70.28 0.0 probable pectinesterase 8
blastp_pdb 1gq8_A 94 392 + 299 Gaps:22 94.36 319 33.22 2e-47 mol:protein length:319 PECTINESTERASE
blastp_pdb 1xg2_A 95 392 + 298 Gaps:22 94.64 317 30.33 7e-41 mol:protein length:317 Pectinesterase 1
blastp_pdb 2ntq_B 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntq_A 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntp_B 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntp_A 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntb_B 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntb_A 91 379 + 289 Gaps:56 95.61 342 28.44 5e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 1qjv_B 91 379 + 289 Gaps:56 95.61 342 28.44 9e-21 mol:protein length:342 PECTIN METHYLESTERASE
blastp_pdb 1qjv_A 91 379 + 289 Gaps:56 95.61 342 28.44 9e-21 mol:protein length:342 PECTIN METHYLESTERASE
blastp_uniprot_sprot sp|O23038|PME8_ARATH 66 392 + 327 Gaps:1 83.46 393 66.77 4e-173 Probable pectinesterase 8 OS Arabidopsis thaliana GN PME8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZQA3|PME15_ARATH 6 395 + 390 Gaps:9 94.10 407 48.83 2e-124 Probable pectinesterase 15 OS Arabidopsis thaliana GN PME15 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZQA4|PME14_ARATH 75 391 + 317 Gaps:8 92.79 333 52.10 5e-110 Putative pectinesterase 14 OS Arabidopsis thaliana GN PME14 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VYZ3|PME53_ARATH 103 392 + 290 Gaps:14 75.20 383 47.92 2e-94 Probable pectinesterase 53 OS Arabidopsis thaliana GN PME53 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LPF3|PME68_ARATH 66 393 + 328 Gaps:27 87.02 362 47.62 1e-86 Probable pectinesterase 68 OS Arabidopsis thaliana GN PME68 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LY18|PME49_ARATH 80 393 + 314 Gaps:11 84.49 361 41.31 3e-77 Probable pectinesterase 49 OS Arabidopsis thaliana GN PME49 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FM79|PME62_ARATH 94 392 + 299 Gaps:17 78.42 380 45.30 1e-76 Pectinesterase QRT1 OS Arabidopsis thaliana GN QRT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LY17|PME50_ARATH 80 393 + 314 Gaps:11 84.49 361 40.00 1e-74 Probable pectinesterase 50 OS Arabidopsis thaliana GN PME50 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIJ9|PME11_ARATH 90 393 + 304 Gaps:20 81.82 352 40.62 5e-72 Putative pectinesterase 11 OS Arabidopsis thaliana GN PME11 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FKF3|PME63_ARATH 96 393 + 298 Gaps:10 85.80 338 40.69 3e-71 Putative pectinesterase 63 OS Arabidopsis thaliana GN PME63 PE 3 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 21 24 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 94 393 300 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 93 394 302 SSF51126 none none IPR011050
ProSitePatterns 242 251 10 PS00503 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Pectinesterase signature 2. IPR018040
Pfam 94 387 294 PF01095 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Pectinesterase IPR000070
PANTHER 94 395 302 PTHR31321 none none none
Phobius 25 395 371 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 7 29 22
TMHMM 39 61 22
SignalP_EUK 1 21 20

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 1 0.964 0.019 NON-PLANT 31