Release notes

WARNING: all the link towards issue details will forward on our private server. Ask an account to URGI to access them.

Available versions

Version 1.0.5 (2012/09/05)

Sub-task

  • [GNP-1588] - Functional validation GnpSeqNGS_1_0_4

Task

  • [GNP-826] - Recreate Aster.U1_PROJECT.
  • [GNP-1586] - Release GnpSeqNGS 1.0.4

Version 1.0.4 (2012/07/11)

Bug

  • [GNP-1435] - The toggle function for the menu items does not work.
  • [GNP-1484] - Sample name is duplicated in subrun card.

Improvement

  • [GNP-1355] - Make the taxon search case insensitive.
  • [GNP-1385] - Display navigation tabs on taxon result page even if there are no results.
  • [GNP-1413] - Change the style of html links.
  • [GNP-1559] - Convert exiting source to UTF-8

New Feature

  • [GNP-1486] - Hardware : Harmonisation between SNP, Array and Map
  • [GNP-1488] - Add species group selection tool.

Story

  • [GNP-1567] - Rationalize and unify version system

Task

  • [GNP-1389] - Performance tests in GnpIS with species restriction.
  • [GNP-1397] - Set up common method to download files : Siregal, GnpSeqNGS, Ephesis...
  • [GNP-1405] - Release GnpSeqNGS 1.0.3.

Version 1.0.3 (2012/04/03)

Improvement

Task

Version 1.0.2 (2012/03/06)

Bug

  • [GNP-1222] - Some specific content on certain pages of GnpIS is not translated
  • [GNP-1261] - Active tab on common page is clickable and causes error 500.
  • [GNP-1265] - Remove empty fields displayed in run card.
  • [GNP-1317] - Analysis filter in project card is not active in GnpSeqNGS module.
  • [GNP-1330] - "Back to URGI home page" from GnpMap and GnpArray display problem

Improvement

  • [GNP-994] - Update common Contact card and general display to avoid data deduplication.
  • [GNP-1122] - On taxon result page, replace term 'object' by something more biological.
  • [GNP-1124] - Choose between taxon, scientific name, genotype or organism on all applications
  • [GNP-1204] - Memory leaks hunt
  • [GNP-1264] - Open file link in a popup (in run card).

New Feature

  • [GNP-1069] - Ontology loading: loading tool.
  • [GNP-1123] - Taxon form: add autocompletion on scientific name.
  • [GNP-1165] - Global Taxon form : add restriction to scientific object (acessions, snps, ...)
  • [GNP-1210] - Create table SpeciesGroup.
  • [GNP-1280] - Create publication form/results pages.
  • [GNP-1321] - Allow file downloading in GnpSeqNGS experiment and analysis card.

Task

  • [GNP-896] - Functional validation for the iteration.
  • [GNP-905] - Merge all UML files.
  • [GNP-1068] - Ontology loading: technical evaluation for *.obo file parsing.
  • [GNP-1260] - Release GnpSeqNGS 1.0.1.
  • [GNP-1287] - Fix failing tests.
  • [GNP-1314] - Update the "Data submission" link of the gnpis tab in all interfaces
  • [GNP-1319] - Exploration: setup Selenium environment for functional tests

Version 1.0.1 (2012/01/12)

Bug

  • [GNP-1149] - Taxon result doesn't display all the taxons.
  • [GNP-1186] - WebDesign : Subtitles are duplicated on the run card.
  • [GNP-1192] - Results navigation tool: the number of results displayed dropbox is too small.
  • [GNP-1211] - NGS data is randomly accessed with different user rights.

New Feature

  • [GNP-1103] - Add tabs on Run card to easily switch between GnpSeq/GnpSNP.
  • [GNP-1165] - Global Taxon form : add restriction to scientific object (acessions, snps, ...)
  • [GNP-1166] - Set up web service environment in gnpis.
  • [GNP-1191] - Query restrictions on species: evaluation of automatic data filtering solutions.
  • [GNP-1207] - Taxon card: reduce "details" table when switching tab.

Task

Version 1.0.0 (2011/11/07)

Sub-task

  • [GNP-921] - Create query form page.
  • [GNP-922] - Create results page.
  • [GNP-923] - Create Experiment Card.
  • [GNP-925] - Create Run informations part.
  • [GNP-930] - Create complements information part.
  • [GNP-931] - Create SubRun informations part.
  • [GNP-935] - Add files display in Run Card
  • [GNP-971] - Create query form page.
  • [GNP-972] - Create results page.
  • [GNP-973] - Create Analysis Card.
  • [GNP-1159] - Delete case sensitive in forms.

Bug

  • [GNP-1102] - Fix test failures.
  • [GNP-1155] - Error of accent encodage in taxon card.

Improvement

  • [GNP-981] - Update installation documentation.
  • [GNP-994] - Update common Contact card and general display to avoid data deduplication.
  • [GNP-997] - Improve the experiment card display.
  • [GNP-998] - Improve experiment query form.
  • [GNP-1001] - Improve experiment result page.
  • [GNP-1051] - Make *Path use a full Transitive closure.
  • [GNP-1097] - Improve SubRun card.
  • [GNP-1122] - On taxon result page, replace term 'object' by something more biological.
  • [GNP-1124] - Choose between taxon, scientific name, genotype or organism on all applications

New Feature

  • [GNP-488] - Add a search taxon form/result page in all applications.
  • [GNP-831] - Create new tables in aster to store NGS data (GnpSeq_ngs tables).
  • [GNP-920] - Create Experiment query form for GnpSeq_NGS.
  • [GNP-924] - Create Common Run Card.
  • [GNP-970] - Create Analysis query form for GnpSeq_NGS.
  • [GNP-983] - Create Sample Card.
  • [GNP-984] - Create Project query form for GnpSeq_NGS.
  • [GNP-1065] - Add tab for GnpSeq on common cards.
  • [GNP-1100] - Add overview of the GnpSeq NGS database content on the home page.
  • [GNP-1103] - Add tabs on Run card to easily switch between GnpSeq/GnpSNP.
  • [GNP-1112] - Add "link" field to file data.
  • [GNP-1123] - Taxon form: add autocompletion on scientific name.
  • [GNP-1165] - Global Taxon form : add restriction to scientific object (acessions, snps, ...)
  • [GNP-1166] - Set up web service environment in gnpis.

Task

  • [GNP-896] - Functional validation for the iteration.
  • [GNP-905] - Merge all UML files.
  • [GNP-915] - Contact migration: correct the FK toward *_OLD tables
  • [GNP-919] - Create a new module in cargo2 for GnpSeq_NGS.
  • [GNP-944] - Upgrade Hibernate version.
  • [GNP-1093] - Create action test for GnpSeq_Ngs