Analysis : PN40024 polymorphism detection
Analysis details
| Name | PN40024 polymorphism detection |
| Analysis type | SNP detection |
| Software | MapHits v0 |
| Reference genome | Vitis vinifera 12X.0 |
| Comments | Allele differences between sanger reference sequence and illumina reads: residual heterozygoty and potential sanger sequencing errors. |
Execution details
| Command line | Bwa with -n=0.01 & VarScan with Min coverage10, Min variant read=4, Min variant allele frequency=30%, Max P-Value=1e-3 |
| Runs | 2 |
| Result file |
VVinifera_v5.1_chr_05Jan2010.fasta
PN40024_sorted.bam PN40024.pileup.bgz PN40024_sequencing_errors_and_residual_heterozygosity.vcf.gz PN40024_114nt_SNPs.VarScan PN40024_76nt_SNPs.VarScan PN40024_all_SNPs.VarScan |
More informations
| Project | PN40024 |
| Contact | Nacer MOHELLIBI |