GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_11953.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_11953	1	941	941	n/a	100.00	941	96.07	0.00	0.0	hypothetical protein
	bfu:BC1G_13505	47	920	874	Gaps:47	78.60	1159	74.53	8.45	0.0	hypothetical protein
	pan:PODANSg9294	47	916	870	Gaps:95	82.05	1042	52.28	17.08	0.0	hypothetical protein
	fgr:FG07941.1	47	920	874	Gaps:118	83.48	1035	50.69	17.48	0.0	hypothetical protein
	pno:SNOG_12044	294	929	636	Gaps:12	58.76	1079	59.62	16.09	0.0	hypothetical protein
	ncr:NCU02356	47	916	870	Gaps:82	76.75	1131	50.00	14.98	0.0	similar to white collar 1
	mgr:MGG_03538	47	938	892	Gaps:104	82.99	1070	44.71	18.47	0.0	MG03538.4 hypothetical protein
	act:ACLA_033760	291	926	636	Gaps:37	69.15	872	50.08	17.25	1e-159	GATA transcription factor LreA
	nfi:NFIA_071440	293	918	626	Gaps:38	68.44	865	49.66	18.24	1e-155	GATA transcription factor LreA
	pcs:Pc20g08380	289	918	630	Gaps:54	72.77	852	46.94	20.00	1e-155	Pc20g08380
blastp_uniprot_sprot	sp\|Q01371\|WC1_NEUCR	47	930	884	Gaps:82	75.58	1167	49.55	14.85	0.0	White collar 1 protein OS Neurospora crassa GN wc-1 PE 2 SV 2
	sp\|Q94BT6\|ADO1_ARATH	325	458	134	Gaps:11	22.50	609	44.53	13.14	6e-20	Adagio protein 1 OS Arabidopsis thaliana GN ADO1 PE 1 SV 2
	sp\|Q5Z8K3\|ADO1_ORYSJ	325	444	120	Gaps:4	18.41	630	48.28	10.34	3e-19	Adagio-like protein 1 OS Oryza sativa subsp. japonica GN Os06g0694000 PE 2 SV 1
	sp\|Q9ST27\|PHOT2_ORYSJ	323	451	129	Gaps:26	23.93	907	46.08	16.13	8e-19	Phototropin-2 OS Oryza sativa subsp. japonica GN PHOT2 PE 1 SV 1
	sp\|P93025\|PHOT2_ARATH	323	456	134	Gaps:26	24.26	915	44.59	14.86	2e-18	Phototropin-2 OS Arabidopsis thaliana GN PHOT2 PE 1 SV 2
	sp\|Q9C9W9\|ADO3_ARATH	326	439	114	Gaps:4	17.77	619	45.45	18.18	5e-18	Adagio protein 3 OS Arabidopsis thaliana GN ADO3 PE 1 SV 1
	sp\|O48963\|PHOT1_ARATH	327	456	130	Gaps:26	21.89	996	43.58	16.97	4e-17	Phototropin-1 OS Arabidopsis thaliana GN PHOT1 PE 1 SV 1
	sp\|Q2RBR1\|PHT1B_ORYSJ	203	450	248	Gaps:80	32.79	921	39.74	19.54	7e-17	Phototropin-1B OS Oryza sativa subsp. japonica GN PHOT1B PE 1 SV 2
	sp\|Q2QYY8\|PHT1A_ORYSJ	203	450	248	Gaps:80	32.79	921	39.07	19.54	7e-17	Phototropin-1A OS Oryza sativa subsp. japonica GN PHOT1A PE 1 SV 2
	sp\|Q8W420\|ADO2_ARATH	325	427	103	Gaps:2	16.53	611	44.55	16.83	9e-17	Adagio protein 2 OS Arabidopsis thaliana GN ADO2 PE 1 SV 1
blastp_pdb	3hjk_B	293	440	148	Gaps:2	94.81	154	43.84	24.66	5e-34	mol:protein length:154 Vivid PAS protein VVD
	3hjk_A	293	440	148	Gaps:2	94.81	154	43.84	24.66	5e-34	mol:protein length:154 Vivid PAS protein VVD
	3is2_A	293	440	148	Gaps:2	94.81	154	43.15	25.34	7e-34	mol:protein length:154 Vivid PAS protein VVD
	3is2_B	293	440	148	Gaps:2	94.81	154	43.15	25.34	7e-34	mol:protein length:154 Vivid PAS protein VVD
	3hji_B	293	440	148	Gaps:2	94.81	154	43.15	25.34	7e-34	mol:protein length:154 Vivid PAS protein VVD
	3hji_A	293	440	148	Gaps:2	94.81	154	43.15	25.34	7e-34	mol:protein length:154 Vivid PAS protein VVD
	2pdt_D	293	440	148	Gaps:2	97.99	149	43.15	25.34	9e-34	mol:protein length:149 Vivid PAS protein VVD
	2pdt_C	293	440	148	Gaps:2	97.99	149	43.15	25.34	9e-34	mol:protein length:149 Vivid PAS protein VVD
	2pdt_B	293	440	148	Gaps:2	97.99	149	43.15	25.34	9e-34	mol:protein length:149 Vivid PAS protein VVD
	2pdt_A	293	440	148	Gaps:2	97.99	149	43.15	25.34	9e-34	mol:protein length:149 Vivid PAS protein VVD
rpsblast_cdd	gnl\|CDD\|172131	328	441	114	Gaps:13	15.05	671	44.55	19.80	6e-25	PRK13558 PRK13558 bacterio-opsin activator Provisional.
	gnl\|CDD\|172132	326	441	116	Gaps:13	28.53	361	40.78	16.50	2e-22	PRK13559 PRK13559 hypothetical protein Provisional.
	gnl\|CDD\|172130	328	441	114	Gaps:13	20.00	505	40.59	18.81	2e-17	PRK13557 PRK13557 histidine kinase Provisional.
	gnl\|CDD\|128682	883	916	34	n/a	65.38	52	67.65	8.82	1e-12	smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
	gnl\|CDD\|109380	885	916	32	n/a	88.89	36	68.75	6.25	1e-12	pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
	gnl\|CDD\|29259	885	916	32	n/a	59.26	54	62.50	12.50	2e-09	cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.
	gnl\|CDD\|29035	520	620	101	Gaps:1	99.03	103	30.39	17.65	6e-09	cd00130 PAS PAS domain PAS motifs appear in archaea eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands and to act as sensors for light and oxygen in signal transduction..
	gnl\|CDD\|117024	533	618	86	Gaps:6	97.78	90	30.68	19.32	2e-08	pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea eubacteria and eukarya.
rpsblast_kog	no results

Other analysis

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