GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_07525.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_07525	1	572	572	n/a	98.45	581	98.95	0.00	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	bfu:BC1G_05075	1	572	572	n/a	98.45	581	98.43	0.17	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	ncr:NCU01229	1	569	569	Gaps:6	98.60	571	86.68	7.10	0.0	similar to histone acetyltransferase K07739 elongator complex protein 3 [EC:2.3.1.48]
	pan:PODANSg8269	16	569	554	n/a	96.85	572	86.64	7.58	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	cim:CIMG_06045	1	571	571	Gaps:1	98.62	580	87.59	4.72	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	mgr:MGG_05481	8	569	562	Gaps:1	98.95	569	85.61	7.10	0.0	MG05481.4 hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	ang:An17g01660	1	571	571	Gaps:2	98.96	575	86.64	5.98	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	ani:AN2294.2	1	571	571	Gaps:3	98.95	574	87.68	4.93	0.0	hypothetical protein K07739 elongator complex protein 3 [EC:2.3.1.48]
	afv:AFLA_048620	1	571	571	Gaps:2	98.96	575	85.94	6.33	0.0	histone acetyltransferase putative K07739 elongator complex protein 3 [EC:2.3.1.48]
	aor:AO090009000643	1	571	571	Gaps:2	98.96	575	85.94	6.33	0.0	RNA polymerase II elongator complex subunit ELP3/histone acetyltransferase K07739 elongator complex protein 3 [EC:2.3.1.48]
blastp_uniprot_sprot	sp\|Q02908\|ELP3_YEAST	16	569	554	Gaps:5	98.56	557	75.59	10.56	0.0	Elongator complex protein 3 OS Saccharomyces cerevisiae GN ELP3 PE 1 SV 1
	sp\|O14023\|ELP3_SCHPO	31	569	539	Gaps:10	97.98	544	76.92	10.88	0.0	Probable elongator complex protein 3 OS Schizosaccharomyces pombe GN elp3 PE 2 SV 1
	sp\|Q5RIC0\|ELP3_DANRE	16	569	554	Gaps:9	99.45	548	73.94	11.56	0.0	Elongator complex protein 3 OS Danio rerio GN elp3 PE 2 SV 3
	sp\|Q5HZM6\|ELP3_XENLA	25	569	545	Gaps:9	97.63	549	73.69	11.94	0.0	Elongator complex protein 3 OS Xenopus laevis GN elp3 PE 2 SV 1
	sp\|Q5ZHS1\|ELP3_CHICK	27	569	543	Gaps:9	97.80	546	73.97	11.05	0.0	Elongator complex protein 3 OS Gallus gallus GN ELP3 PE 2 SV 1
	sp\|Q6NVL5\|ELP3_XENTR	25	569	545	Gaps:9	97.63	549	74.44	11.01	0.0	Elongator complex protein 3 OS Xenopus tropicalis GN elp3 PE 2 SV 1
	sp\|Q7X7L3\|ELP3_ORYSJ	13	569	557	Gaps:16	96.86	573	71.17	10.45	0.0	Elongator complex protein 3 OS Oryza sativa subsp. japonica GN ELP3 PE 2 SV 2
	sp\|Q9VQZ6\|ELP3_DROME	26	569	544	Gaps:9	96.92	552	73.46	12.15	0.0	Probable elongator complex protein 3 OS Drosophila melanogaster GN Elp3 PE 2 SV 1
	sp\|Q93ZR1\|ELP3_ARATH	25	569	545	Gaps:9	94.87	565	72.01	11.57	0.0	Elongator complex protein 3 OS Arabidopsis thaliana GN HAG3 PE 1 SV 1
	sp\|Q9H9T3\|ELP3_HUMAN	15	569	555	Gaps:10	99.63	547	72.48	11.74	0.0	Elongator complex protein 3 OS Homo sapiens GN ELP3 PE 1 SV 2
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|162253	54	569	516	Gaps:17	97.89	522	53.23	15.85	0.0	TIGR01211 ELP3 histone acetyltransferase ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
	gnl\|CDD\|31436	54	569	516	Gaps:17	97.67	515	53.48	16.30	0.0	COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics].
	gnl\|CDD\|31435	203	394	192	Gaps:12	61.54	312	26.56	21.35	2e-20	COG1242 COG1242 Predicted Fe-S oxidoreductase [General function prediction only].
	gnl\|CDD\|130279	237	398	162	Gaps:9	53.97	302	26.99	21.47	3e-19	TIGR01212 TIGR01212 radical SAM protein TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211 a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
	gnl\|CDD\|128968	235	370	136	Gaps:6	61.11	216	31.82	17.42	5e-19	smart00729 Elp3 Elongator protein 3 MiaB family Radical SAM. This superfamily contains MoaA NifB PqqE coproporphyrinogen III oxidase biotin synthase and MiaB families and includes a representative in the eukaryotic elongator subunit Elp-3. Some members of the family are methyltransferases.
	gnl\|CDD\|146602	118	325	208	Gaps:48	96.97	165	26.88	15.62	2e-11	pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions including unusual methylations isomerisation sulphur insertion ring formation anaerobic oxidation and protein radical formation.
	gnl\|CDD\|30980	122	358	237	Gaps:55	49.04	416	25.00	13.24	2e-10	COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].
	gnl\|CDD\|100105	117	353	237	Gaps:52	91.67	204	20.32	14.44	7e-08	cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif which coordinates the conserved iron-sulfur cluster. Mechanistically they share the transfer of a single electron from the iron-sulfur cluster to SAM which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical which in turn abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism DNA repair the biosynthesis of vitamins and coenzymes and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB) lipoyl synthase (LipA) pyruvate formate-lyase (PFL) coproporphyrinogen oxidase (HemN) lysine 2 3-aminomutase (LAM) anaerobic ribonucleotide reductase (ARR) and MoaA an enzyme of the biosynthesis of molybdopterin..
rpsblast_kog	gnl\|CDD\|37746	24	569	546	Gaps:9	96.93	554	77.65	10.24	0.0	KOG2535 KOG2535 KOG2535 RNA polymerase II elongator complex subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics Transcription].

Other analysis

Functional Gbrowse

Ortholog