GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_05425.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_05425	1	432	432	n/a	100.00	432	93.52	0.00	0.0	hypothetical protein
	bfu:BC1G_09925	142	417	276	Gaps:5	98.55	275	62.73	10.70	2e-91	hypothetical protein
	mgr:MGCH7_ch7g457	12	432	421	Gaps:48	83.30	539	42.54	14.48	5e-85	MGG_ch7g457 hypothetical protein
	pan:PODANSg3913	11	427	417	Gaps:26	98.77	408	46.40	12.90	5e-83	hypothetical protein
	tml:GSTUM_00003411001	13	428	416	Gaps:41	97.79	408	42.36	14.79	4e-71	hypothetical protein
	pno:SNOG_11711	11	431	421	Gaps:78	98.38	371	46.58	13.70	1e-68	hypothetical protein
	ncr:NCU03149	60	430	371	Gaps:58	99.51	411	41.08	13.45	3e-68	hypothetical protein
	mgr:MGG_02712	73	432	360	Gaps:45	96.98	397	39.22	15.32	1e-62	MG02712.4 hypothetical protein
	afv:AFLA_051070	5	431	427	Gaps:94	97.13	522	33.14	15.19	1e-58	tRNA-specific adenosine deaminase putative
	nfi:NFIA_019030	15	431	417	Gaps:103	95.85	530	33.27	14.96	2e-58	tRNA-specific adenosine deaminase putative
blastp_uniprot_sprot	sp\|O42912\|TAD1_SCHPO	8	356	349	Gaps:41	84.02	388	38.04	13.50	3e-40	tRNA-specific adenosine deaminase 1 OS Schizosaccharomyces pombe GN SPBC16A3.06 PE 2 SV 1
	sp\|P53065\|TAD1_YEAST	9	268	260	Gaps:17	64.25	400	35.80	15.56	5e-29	tRNA-specific adenosine deaminase 1 OS Saccharomyces cerevisiae GN TAD1 PE 1 SV 1
	sp\|Q9V3R6\|ADAT1_DROME	10	217	208	Gaps:42	47.72	394	36.17	12.77	1e-12	tRNA-specific adenosine deaminase 1 OS Drosophila melanogaster GN adat PE 2 SV 1
	sp\|Q5ZI16\|ADAT1_CHICK	11	154	144	Gaps:29	28.83	503	35.86	18.62	6e-11	tRNA-specific adenosine deaminase 1 OS Gallus gallus GN ADAT1 PE 2 SV 1
	sp\|Q9JHI2\|ADAT1_MOUSE	11	154	144	Gaps:33	29.06	499	34.48	17.93	1e-09	tRNA-specific adenosine deaminase 1 OS Mus musculus GN Adat1 PE 2 SV 1
	sp\|Q54XP3\|ADAT1_DICDI	12	154	143	Gaps:19	27.52	545	34.00	14.67	2e-09	tRNA-specific adenosine deaminase 1 OS Dictyostelium discoideum GN adat1 PE 3 SV 1
	sp\|Q22618\|ADR2_CAEEL	54	365	312	Gaps:64	56.57	495	27.86	14.64	4e-08	Probable double-stranded RNA-specific adenosine deaminase OS Caenorhabditis elegans GN adr-2 PE 1 SV 2
	sp\|Q9BUB4\|ADAT1_HUMAN	11	209	199	Gaps:51	38.25	502	31.25	17.71	4e-08	tRNA-specific adenosine deaminase 1 OS Homo sapiens GN ADAT1 PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|145344	60	421	362	Gaps:60	99.08	325	35.71	11.49	3e-57	pfam02137 A_deamin Adenosine-deaminase (editase) domain. Adenosine deaminases acting on RNA (ADARs) can deaminate adenosine to form inosine. In long double-stranded RNA this process is non-specific it occurs site-specifically in RNA transcripts. The former is important in defence against viruses whereas the latter may affect splicing or untranslated regions. They are primarily nuclear proteins but a longer isoform of ADAR1 is found predominantly in the cytoplasm. The region described in this family includes the catalytic domain which has three active site sequence motifs characteristic of ADARs each containing a cysteine or histidine that binds zinc.
rpsblast_cdd	gnl\|CDD\|128825	12	355	344	Gaps:56	82.35	374	31.49	16.56	2e-44	smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
rpsblast_kog	gnl\|CDD\|37988	4	427	424	Gaps:58	68.63	542	28.76	14.78	7e-41	KOG2777 KOG2777 KOG2777 tRNA-specific adenosine deaminase 1 [RNA processing and modification].

Other analysis

Functional Gbrowse

Ortholog