GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_02152.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_02152	1	610	610	n/a	100.00	610	95.57	0.00	0.0	hypothetical protein K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	bfu:BC1G_06223	1	610	610	Gaps:3	100.00	607	87.48	3.46	0.0	hypothetical protein K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	fgr:FG08761.1	2	610	609	Gaps:8	99.18	610	69.26	12.07	0.0	hypothetical protein K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	cim:CIMG_01307	1	610	610	Gaps:14	98.85	609	67.94	12.29	0.0	lysyl-tRNA synthetase cytoplasmic K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	ani:AN1913.2	3	610	608	Gaps:11	98.51	606	67.84	11.56	0.0	hypothetical protein K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	act:ACLA_081800	8	607	600	Gaps:13	96.39	609	68.65	11.58	0.0	lysyl-tRNA synthetase K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	afm:AFUA_6G07640	8	607	600	Gaps:13	97.02	605	68.14	12.44	0.0	lysyl-tRNA synthetase (EC:6.1.1.6) K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	afv:AFLA_036270	3	610	608	Gaps:13	98.51	604	68.40	11.43	0.0	lysyl-tRNA synthetase K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	aor:AO090003000186	3	610	608	Gaps:13	98.51	604	68.40	11.43	0.0	lysyl-tRNA synthetase (class II) K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
	nfi:NFIA_053310	8	607	600	Gaps:13	97.02	605	68.14	12.27	0.0	lysyl-tRNA synthetase K04567 lysyl-tRNA synthetase class II [EC:6.1.1.6]
blastp_uniprot_sprot	sp\|Q9UUE6\|SYKC_SCHPO	9	586	578	Gaps:14	96.11	591	59.51	13.20	0.0	Lysyl-tRNA synthetase cytoplasmic OS Schizosaccharomyces pombe GN krs1 PE 2 SV 1
	sp\|P15180\|SYKC_YEAST	1	584	584	Gaps:19	96.95	591	58.29	14.49	0.0	Lysyl-tRNA synthetase cytoplasmic OS Saccharomyces cerevisiae GN KRS1 PE 1 SV 2
	sp\|Q15046\|SYK_HUMAN	60	597	538	Gaps:21	87.27	597	57.39	17.27	1e-176	Lysyl-tRNA synthetase OS Homo sapiens GN KARS PE 1 SV 3
	sp\|Q99MN1\|SYK_MOUSE	59	597	539	Gaps:21	87.73	595	57.28	16.48	1e-174	Lysyl-tRNA synthetase OS Mus musculus GN Kars PE 1 SV 1
	sp\|P37879\|SYK_CRIGR	59	597	539	Gaps:21	87.44	597	56.90	17.05	1e-174	Lysyl-tRNA synthetase OS Cricetulus griseus GN KARS PE 1 SV 1
	sp\|Q22099\|SYK_CAEEL	65	582	518	Gaps:25	87.94	572	54.87	15.51	1e-158	Lysyl-tRNA synthetase OS Caenorhabditis elegans GN krs-1 PE 2 SV 1
	sp\|Q6F2U9\|SYK_ORYSJ	57	582	526	Gaps:40	88.04	602	51.70	16.79	1e-157	Lysyl-tRNA synthetase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
	sp\|Q9ZPI1\|SYK_ARATH	59	582	524	Gaps:41	84.50	626	49.72	19.66	1e-155	Lysyl-tRNA synthetase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
	sp\|Q43776\|SYK_SOLLC	60	582	523	Gaps:52	91.67	588	46.75	19.29	1e-146	Lysyl-tRNA synthetase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
	sp\|C4V8R9\|SYKC_NOSCE	95	587	493	Gaps:24	93.19	514	49.06	18.58	1e-130	Probable lysyl-tRNA synthetase cytoplasmic OS Nosema ceranae (strain BRL01) GN NCER_100909 PE 3 SV 1
blastp_pdb	3bju_D	64	592	529	Gaps:21	98.27	521	58.01	16.80	1e-174	mol:protein length:521 Lysyl-tRNA synthetase
	3bju_C	64	592	529	Gaps:21	98.27	521	58.01	16.80	1e-174	mol:protein length:521 Lysyl-tRNA synthetase
	3bju_B	64	592	529	Gaps:21	98.27	521	58.01	16.80	1e-174	mol:protein length:521 Lysyl-tRNA synthetase
	3bju_A	64	592	529	Gaps:21	98.27	521	58.01	16.80	1e-174	mol:protein length:521 Lysyl-tRNA synthetase
	3e9i_D	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
	3e9i_C	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
	3e9i_B	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
	3e9i_A	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
	3e9h_D	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
	3e9h_C	81	582	502	Gaps:25	97.16	493	44.26	21.50	1e-107	mol:protein length:493 Lysyl-tRNA synthetase
rpsblast_cdd	gnl\|CDD\|166143	17	586	570	Gaps:29	99.29	561	54.76	15.80	0.0	PLN02502 PLN02502 lysine-tRNA ligase.
	gnl\|CDD\|166984	93	582	490	Gaps:25	93.59	499	46.90	19.27	0.0	PRK00484 lysS lysyl-tRNA synthetase Reviewed.
	gnl\|CDD\|129590	65	584	520	Gaps:27	99.80	496	46.67	19.39	1e-169	TIGR00499 lysS_bact lysyl-tRNA synthetase eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme but not archaeal or spirochete forms.
	gnl\|CDD\|31383	93	583	491	Gaps:26	93.82	502	47.98	16.35	1e-163	COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|29820	247	583	337	Gaps:8	100.00	329	58.66	15.81	1e-144	cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate..
	gnl\|CDD\|173607	18	582	565	Gaps:46	90.43	585	48.58	19.47	1e-140	PTZ00417 PTZ00417 lysine-tRNA ligase Provisional.
	gnl\|CDD\|173577	43	587	545	Gaps:30	84.87	628	38.27	21.58	1e-119	PTZ00385 PTZ00385 lysyl-tRNA synthetase Provisional.
	gnl\|CDD\|167475	125	582	458	Gaps:21	39.80	1103	38.72	17.54	1e-113	PRK02983 lysS lysyl-tRNA synthetase Provisional.
	gnl\|CDD\|171504	123	582	460	Gaps:22	86.73	505	42.92	21.23	3e-96	PRK12445 PRK12445 lysyl-tRNA synthetase Reviewed.
	gnl\|CDD\|143920	232	583	352	Gaps:29	100.00	341	32.84	16.13	2e-91	pfam00152 tRNA-synt_2 tRNA synthetases class II (D K and N).
rpsblast_kog	gnl\|CDD\|37096	12	587	576	Gaps:20	100.00	560	59.11	15.36	0.0	KOG1885 KOG1885 KOG1885 Lysyl-tRNA synthetase (class II) [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|35776	13	579	567	Gaps:103	97.94	533	23.75	20.11	1e-20	KOG0556 KOG0556 KOG0556 Aspartyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|37622	181	579	399	Gaps:21	49.68	628	30.13	16.99	1e-18	KOG2411 KOG2411 KOG2411 Aspartyl-tRNA synthetase mitochondrial [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|35774	126	579	454	Gaps:88	93.27	446	23.32	19.71	3e-14	KOG0554 KOG0554 KOG0554 Asparaginyl-tRNA synthetase (mitochondrial) [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|35775	239	579	341	Gaps:48	56.70	545	26.21	20.71	7e-11	KOG0555 KOG0555 KOG0555 Asparaginyl-tRNA synthetase [Translation ribosomal structure and biogenesis].

Other analysis

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