GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P153360.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_11394	1	360	360	Gaps:32	100.00	328	99.70	0.30	0.0	hypothetical protein
	ssl:SS1G_11017	1	360	360	Gaps:33	98.80	333	88.15	4.86	1e-159	hypothetical protein
	ncr:NCU02254	19	357	339	Gaps:35	95.83	384	49.46	14.40	7e-93	hypothetical protein
	afv:AFLA_085840	19	358	340	Gaps:39	93.05	403	43.47	17.60	1e-82	tubulin-specific chaperone c putative
	act:ACLA_036880	19	357	339	Gaps:41	92.16	408	44.41	17.55	1e-82	tubulin-specific chaperone c putative
	nfi:NFIA_068220	19	358	340	Gaps:37	92.40	408	42.97	18.30	3e-82	tubulin-specific chaperone c putative
	afm:AFUA_3G08900	19	358	340	Gaps:37	92.40	408	43.77	18.30	2e-81	tubulin-specific chaperone c
	mgr:MGG_00899	21	357	337	Gaps:51	98.01	351	47.38	18.60	6e-81	MG00899.4 hypothetical protein
	aor:AO090005001346	19	358	340	Gaps:40	93.03	402	43.32	17.65	1e-80	hypothetical protein
	ang:An16g02430	19	358	340	Gaps:40	92.80	403	43.58	17.11	2e-80	hypothetical protein
blastp_uniprot_sprot	sp\|Q8VCN9\|TBCC_MOUSE	200	330	131	Gaps:15	39.30	341	38.06	15.67	3e-18	Tubulin-specific chaperone C OS Mus musculus GN Tbcc PE 2 SV 1
	sp\|Q15814\|TBCC_HUMAN	200	330	131	Gaps:15	38.73	346	37.31	17.16	3e-17	Tubulin-specific chaperone C OS Homo sapiens GN TBCC PE 1 SV 1
	sp\|Q3SZE9\|TBCC_BOVIN	159	330	172	Gaps:15	50.72	345	29.14	21.14	7e-17	Tubulin-specific chaperone C OS Bos taurus GN TBCC PE 2 SV 1
	sp\|Q5R5J7\|TBCC_PONAB	200	330	131	Gaps:15	38.73	346	36.57	17.16	8e-17	Tubulin-specific chaperone C OS Pongo abelii GN TBCC PE 2 SV 1
	sp\|O75695\|XRP2_HUMAN	221	335	115	Gaps:10	34.57	350	24.79	24.79	5e-09	Protein XRP2 OS Homo sapiens GN RP2 PE 1 SV 4
	sp\|Q9EPK2\|XRP2_MOUSE	221	335	115	Gaps:10	34.87	347	24.79	23.97	2e-08	Protein XRP2 OS Mus musculus GN Rp2 PE 2 SV 3
blastp_pdb	2yuh_A	200	330	131	Gaps:15	74.86	179	37.31	17.16	2e-17	mol:protein length:179 Tubulin-specific chaperone C
	3bh7_B	221	335	115	Gaps:10	34.38	352	24.79	24.79	9e-10	mol:protein length:352 Protein XRP2
	3bh6_B	221	335	115	Gaps:10	34.38	352	24.79	24.79	9e-10	mol:protein length:352 Protein XRP2
	2bx6_A	221	335	115	Gaps:10	34.57	350	24.79	24.79	1e-09	mol:protein length:350 XRP2 PROTEIN
rpsblast_cdd	gnl\|CDD\|149201	195	311	117	Gaps:15	100.00	120	39.17	14.17	2e-33	pfam07986 TBCC Tubulin binding cofactor C. Members of this family are involved in the folding pathway of tubulins and form a beta helix structure.
rpsblast_kog	gnl\|CDD\|37723	157	330	174	Gaps:17	52.52	337	28.81	11.86	3e-20	KOG2512 KOG2512 KOG2512 Beta-tubulin folding cofactor C [Posttranslational modification protein turnover chaperones].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCOA_576230	244431	245188	705	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_574062	244435	245169	682	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_573036	244435	245166	679	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_578037	244435	245167	680	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572683	244435	245157	670	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_575258	244435	245167	680	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_580748	244435	245143	656	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571140	244435	245142	655	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_580158	244435	245143	656	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571319	244435	245122	635	99.21	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571258	244435	245101	614	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571053	244436	245098	610	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_578124	244435	245073	585	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_578067	244435	245004	517	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571921	244435	244889	402	99.75	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571013	244456	244827	319	99.69	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572338	244435	244738	259	96.91	100.00	n/a	Botrytis cinerea HortResearch libraries
	B1BC_045_014_H12	244296	245087	685	99.71	100.00	n/a	BC ATCC 58025 (G3)
	AL114404	244297	244877	475	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL116960	244619	244877	259	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL113799	244295	244862	460	99.57	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA13YI10FM1	244516	245282	714	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA15YH05FM1	244523	245263	688	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA30YE23FM1	244325	244642	265	98.49	100.00	n/a	BT4 young mycelium library
	YCGA_540121	243938	244538	548	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572533	243944	244420	424	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_581087	243948	244736	683	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_574862	244213	244935	617	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCNA_548191	244115	244905	685	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCNA_551643	244114	244909	689	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCNA_551545	244114	244885	668	99.70	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCNA_551507	244114	244691	472	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_570904	244177	244736	449	99.78	100.00	n/a	Botrytis cinerea HortResearch libraries
	BcA1_3465_F08	244153	244998	740	100.00	100.00	n/a	BC A1 mycelium
	B1BC_045_017_D03	244246	245088	669	99.85	100.00	n/a	BC ATCC 58025 (G3)
	B1BC_045_018_B07	244152	244910	654	99.24	100.00	n/a	BC ATCC 58025 (G3)
	AL113707	244228	244877	544	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA16YL02FM1	244244	245109	760	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA28YC19FM1	244229	245107	773	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA7YA20FM1	244210	245029	714	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA12YD22FM1	244222	244985	658	100.00	100.00	n/a	BT4 young mycelium library
	PD0ACA23YI01FM1	244213	245072	754	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0AGA4YB15CM1	244190	244975	680	100.00	100.00	n/a	BT4 mycelium - different stresses library
	B1BC_045_018_C03	244951	245584	583	99.83	100.00	n/a	BC ATCC 58025 (G3)
	B1BC_045_018_C12	244951	245583	582	99.83	100.00	n/a	BC ATCC 58025 (G3)
	AL117046	245026	245717	640	99.22	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL112780	244973	245577	640	98.38	86.56	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA13YI10NM1r	244781	245643	811	99.88	100.00	n/a	BT4 young mycelium library
	PD0ABA7YA20NM1r	244880	245731	800	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA12YD22NM1r	244884	245732	797	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA11YB24NM1r	245270	245587	266	100.00	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SupSuperContig_176_149_1_bt4ctg_2135_004.Contig1_v5	244246	245088	669	99.85	100.00	n/a	all_lib_clone_nr:1
sim4_Bot_allest4_clctg	CL_bt4_SupSuperContig_176_149_1_bt4ctg_2135_004.Contig2_v5	244152	245732	1424	99.93	100.00	n/a	all_lib_clone_nr:20
sim4_Ss_allest	G786P554FF6.T0	244873	245532	837	85.17	72.52	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P536FH4.T0	244798	245532	848	85.37	72.52	n/a	Ss ESTs grown as mycelia at neutral pH
	G781P5119FG3.T0	244873	245532	791	84.29	77.24	n/a	Ss ESTs grown as developing sclerotia
	G866P35RK3.T0	245056	245532	655	85.88	64.89	n/a	Ss ESTs set from infection cushion
	G866P35FK3.T0	244289	244749	689	84.96	52.10	n/a	Ss ESTs set from infection cushion
	G786P554RF6.T0	244289	245042	795	85.45	74.34	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P536RH4.T0	244289	245015	840	85.26	67.02	n/a	Ss ESTs grown as mycelia at neutral pH
	G781P571RH9.T0	244289	244833	771	83.60	57.72	n/a	Ss ESTs grown as developing sclerotia
blastx_uniprot_sprot	no results
blastx_uniprot_trembl	Q7S5B0	244397	245551	384	56.03	90.62	n/a	Putative uncharacterized protein - Neurospora crassa
	Q4WXB5	244305	245545	408	48.63	89.22	n/a	Tubulin-specific chaperone c putative - Aspergillus fumigatus (Sartorya fumigata)
	A2R764	244305	245554	403	48.07	89.83	n/a	Function: cofactor C of H. sapiens is a tubulin-folding protein - Aspergillus niger
	A1D7F9	244305	245551	408	47.81	89.71	n/a	Tubulin-specific chaperone c putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A1CK09	244305	245545	408	48.90	89.22	n/a	Tubulin-specific chaperone c putative - Aspergillus clavatus
	Q2UQ91	244305	245554	402	48.34	90.05	n/a	Predicted protein - Aspergillus oryzae
	A4RDR0	244397	245551	351	52.12	94.02	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q0CXK2	244412	245551	358	47.52	95.81	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
blastx_FNG30_prot	SS1G_11017.1	244609	245560	333	89.04	90.39	n/a	sclerotinia_sclerotiorum hypothetical protein translation 334 aa
	NCU02254.2	244397	245551	384	56.03	90.62	n/a	Neurospora crassa conserved hypothetical protein translation 385 aa
	gi:71000018:ref:XP_754726.1:	244305	245545	408	48.63	89.22	n/a	Aspergillus fumigatus Af293 tubulin-specific chaperone c
	AO090005001346	244305	245554	402	48.34	90.05	n/a	Aspergillus oryzae predicted protein
	MGG_00899.5	244397	245551	351	52.12	94.02	n/a	magnaporthe_grisea hypothetical protein translation 352 aa
	AN3022	244275	245551	407	44.41	92.38	n/a	Aspergillus nidulans AN3022.3 conserved hypothetical protein translation 408 aa
	SNU12122.1	244305	245539	360	50.60	92.22	n/a	Stagonospora nodorum hypothetical protein translation
	jgi:Triree:44766	244903	245551	330	57.73	58.79	n/a	Trichoderma reesei
	CIMG_07649.2	244609	245488	388	41.42	69.07	n/a	Coccidioides immitis hypothetical protein translation 389 aa
	CHG09633.1	244801	245551	399	40.68	65.91	n/a	Chaetomium globosum hypothetical protein translation 400 aa
sim4_B0510_genes	BC1G_11394.1	244251	245563	987	99.39	100.00	n/a	n/a
sim4_SS_genes	SS1G_11017.1	244289	245532	1002	85.29	80.04	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.77	241049	256582	182608	99.71	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.17	244882	245279	1000361	86.43	n/a	n/a	n/a
	SS_supercontig_1.17	244403	244563	1000361	88.20	n/a	n/a	n/a
	SS_supercontig_1.17	245345	245550	1000361	84.95	n/a	n/a	n/a
	SS_supercontig_1.17	244690	244826	1000361	83.94	n/a	n/a	n/a
blat_oligo	botrytisP00153803	244298	244428	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:40.12 . min_over_threshold:0.97 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00153804	244436	244495	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:90.75 . min_over_threshold:3.07 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00153805	244705	244764	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:110.93 . min_over_threshold:4.48 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00153806	245036	245095	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:176.18 . min_over_threshold:7.4 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00153807	245107	245166	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:119.87 . min_over_threshold:3.7 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00153809	245213	245272	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:128.62 . min_over_threshold:4.26 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00153810	245225	245284	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:152.76 . min_over_threshold:4.4 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00153811	245294	245405	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:140.24 . min_over_threshold:3.77 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00153812	245409	245468	60	n/a	n/a	n/a	array_gene:BofuT4_P153360_1 . max_over_threshold:121.71 . min_over_threshold:5.32 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1

Current manual annotation

Ortholog