GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P121850.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_01441	26	1390	1365	Gaps:7	98.42	1390	82.60	6.29	0.0	hypothetical protein K13339 peroxin-6
	mgr:MGG_00529	26	1304	1279	Gaps:37	93.53	1375	59.88	13.45	0.0	MG00529.4 hypothetical protein K13339 peroxin-6
	ncr:NCU08373	26	1306	1281	Gaps:44	92.76	1381	59.64	14.60	0.0	peroxisomal biogenesis factor 6 K13339 peroxin-6
	pan:PODANSg5629	26	1304	1279	Gaps:97	91.73	1354	57.57	14.90	0.0	hypothetical protein K13339 peroxin-6
	fgr:FG05596.1	257	1390	1134	Gaps:30	99.56	1139	58.99	14.55	0.0	hypothetical protein K13339 peroxin-6
	afm:AFUA_3G08000	26	1306	1281	Gaps:81	90.43	1442	54.75	13.88	0.0	peroxisome biosynthesis protein (PAS8/Peroxin-6) putative K13339 peroxin-6
	nfi:NFIA_069140	26	1304	1279	Gaps:65	90.29	1442	54.61	13.82	0.0	peroxisome assembly factor-2 (peroxisomal-type atpase 1) K13339 peroxin-6
	ure:UREG_01405	31	1299	1269	Gaps:76	92.85	1399	53.58	14.01	0.0	peroxisomal biogenesis factor 6 K13339 peroxin-6
	ang:An16g02010	31	1306	1276	Gaps:96	88.92	1489	52.34	15.41	0.0	hypothetical protein K13339 peroxin-6
	ani:AN2925.2	26	1309	1284	Gaps:77	86.25	1513	53.72	15.02	0.0	hypothetical protein K13339 peroxin-6
blastp_uniprot_sprot	sp\|Q9C1E9\|PEX6_GLOLA	26	1390	1365	Gaps:37	98.41	1388	58.64	14.13	0.0	Peroxisomal biogenesis factor 6 OS Glomerella lagenarium GN PEX6 PE 3 SV 1
	sp\|Q7SGP2\|PEX6_NEUCR	26	1306	1281	Gaps:44	92.76	1381	59.64	14.60	0.0	Peroxisomal biogenesis factor 6 OS Neurospora crassa GN pex-6 PE 3 SV 1
	sp\|Q9HG03\|PEX6_PENCH	27	1311	1285	Gaps:84	89.72	1459	52.86	13.60	0.0	Peroxisomal biogenesis factor 6 OS Penicillium chrysogenum GN pex6 PE 3 SV 1
	sp\|Q9UVU5\|PEX6_PICAN	416	1311	896	Gaps:105	75.33	1135	44.80	17.19	1e-176	Peroxisomal biogenesis factor 6 OS Pichia angusta GN PEX6 PE 1 SV 1
	sp\|P36966\|PEX6_YARLI	410	1302	893	Gaps:128	79.39	1024	46.25	18.57	1e-174	Peroxisomal biogenesis factor 6 OS Yarrowia lipolytica GN PEX6 PE 3 SV 2
	sp\|P33289\|PEX6_PICPA	414	1304	891	Gaps:109	72.79	1165	44.34	18.87	1e-173	Peroxisomal biogenesis factor 6 OS Pichia pastoris GN PEX6 PE 3 SV 1
	sp\|Q6BS73\|PEX6_DEBHA	516	1307	792	Gaps:122	68.28	1198	44.50	16.38	1e-169	Peroxisomal biogenesis factor 6 OS Debaryomyces hansenii GN PEX6 PE 3 SV 2
	sp\|Q6CPV1\|PEX6_KLULA	395	1300	906	Gaps:166	80.00	1000	42.50	17.12	1e-152	Peroxisomal biogenesis factor 6 OS Kluyveromyces lactis GN PEX6 PE 3 SV 1
	sp\|Q6FW67\|PEX6_CANGA	397	1302	906	Gaps:161	80.53	1017	40.29	18.80	1e-145	Peroxisomal biogenesis factor 6 OS Candida glabrata GN PEX6 PE 3 SV 1
	sp\|Q74Z13\|PEX6_ASHGO	557	1301	745	Gaps:99	69.93	1021	44.26	15.27	1e-144	Peroxisomal biogenesis factor 6 OS Ashbya gossypii GN PEX6 PE 3 SV 1
blastp_pdb	1r7r_A	754	1239	486	Gaps:55	60.54	816	50.40	18.83	1e-59	mol:protein length:816 Transitional endoplasmic reticulum ATPase
	3cf3_C	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf3_B	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf3_A	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf2_D	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf2_C	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf2_B	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf2_A	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf1_C	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
	3cf1_B	754	1239	486	Gaps:55	61.29	806	50.20	19.03	2e-59	mol:protein length:806 Transitional endoplasmic reticulum ATPase
rpsblast_cdd	gnl\|CDD\|162267	717	1293	577	Gaps:68	75.99	733	33.39	19.93	4e-75	TIGR01243 CDC48 AAA family ATPase CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
	gnl\|CDD\|30812	750	1235	486	Gaps:72	93.72	494	50.54	18.36	4e-68	COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|167663	991	1253	263	Gaps:19	67.87	389	40.91	18.94	2e-59	PRK03992 PRK03992 proteasome-activating nucleotidase Provisional.
	gnl\|CDD\|31415	989	1229	241	Gaps:8	58.37	406	42.62	19.41	3e-55	COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|130309	991	1229	239	Gaps:8	64.56	364	46.38	18.72	8e-53	TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal.
	gnl\|CDD\|162266	991	1252	262	Gaps:21	53.94	495	39.70	18.35	2e-50	TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
	gnl\|CDD\|143797	1032	1168	137	Gaps:6	100.00	131	52.67	16.79	3e-45	pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly operation or disassembly of protein complexes.
	gnl\|CDD\|164555	993	1229	237	Gaps:11	36.42	637	42.67	19.83	2e-44	CHL00176 ftsH cell division protein Validated.
	gnl\|CDD\|163401	990	1161	172	Gaps:20	35.55	512	47.25	18.13	3e-44	TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria as shown for Mycobacterium tuberculosis some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup the Pup ligase PafA and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
	gnl\|CDD\|170668	997	1250	254	Gaps:14	39.13	644	42.86	17.46	6e-42	PRK10733 hflB ATP-dependent metalloprotease Reviewed.
rpsblast_kog	gnl\|CDD\|35955	510	1300	791	Gaps:123	74.50	953	41.69	16.34	1e-156	KOG0736 KOG0736 KOG0736 Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35952	736	1295	560	Gaps:104	75.31	802	43.21	17.88	6e-83	KOG0733 KOG0733 KOG0733 Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35954	852	1230	379	Gaps:47	51.05	952	37.86	18.11	2e-78	KOG0735 KOG0735 KOG0735 AAA+-type ATPase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35949	754	1225	472	Gaps:76	68.11	693	49.36	19.28	5e-75	KOG0730 KOG0730 KOG0730 AAA+-type ATPase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35950	958	1232	275	Gaps:15	34.37	774	39.47	17.29	7e-47	KOG0731 KOG0731 KOG0731 AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35957	991	1291	301	Gaps:26	56.01	491	36.73	19.64	1e-46	KOG0738 KOG0738 KOG0738 AAA+-type ATPase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35951	992	1236	245	Gaps:13	22.59	1080	41.80	18.44	1e-42	KOG0732 KOG0732 KOG0732 AAA+-type ATPase containing the bromodomain [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35956	979	1292	314	Gaps:20	77.20	386	36.24	17.79	4e-42	KOG0737 KOG0737 KOG0737 AAA+-type ATPase [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35946	991	1229	239	Gaps:7	57.35	408	40.60	18.80	4e-42	KOG0727 KOG0727 KOG0727 26S proteasome regulatory complex ATPase RPT3 [Posttranslational modification protein turnover chaperones].
	gnl\|CDD\|35953	983	1250	268	Gaps:13	34.97	752	36.88	15.97	1e-41	KOG0734 KOG0734 KOG0734 AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification protein turnover chaperones].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCHA_542050	203047	203657	611	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCHA_541350	203046	203657	612	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	B1BC_045_041_D12	202879	203775	897	99.00	100.00	n/a	BC ATCC 58025 (G3)
sim4_Bot_allest4_clctg	B1BC_045_041_D12	202879	203775	897	99.00	100.00	n/a	BC ATCC 58025 (G3)
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q9C1E9	201528	205697	1388	61.09	99.06	n/a	Peroxisomal biogenesis factor 6 - Glomerella lagenarium (Anthracnose fungus) (Colletotrichum lagenarium)
	Q7SGP2	201528	205703	1381	59.29	99.42	n/a	Peroxisomal biogenesis factor 6 - Neurospora crassa
	Q9HG03	201759	205703	1459	53.98	91.16	n/a	Peroxisomal biogenesis factor 6 - Penicillium chrysogenum (Penicillium notatum)
	P33289	201738	204200	1165	46.92	68.24	n/a	Peroxisomal biogenesis factor 6 - Pichia pastoris (Yeast)
	Q9UVU5	201783	204200	1135	47.38	68.81	n/a	Peroxisomal biogenesis factor 6 - Pichia angusta (Yeast) (Hansenula polymorpha)
	P36966	201792	204071	1024	49.79	69.82	n/a	Peroxisomal biogenesis factor 6 - Yarrowia lipolytica (Candida lipolytica)
	Q6BS73	201747	204200	1198	44.44	69.12	n/a	Peroxisomal biogenesis factor 6 - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
	Q6CPV1	201801	204122	1000	45.35	71.00	n/a	Peroxisomal biogenesis factor 6 - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	Q74Z13	201795	204077	1021	44.96	69.93	n/a	Peroxisomal biogenesis factor 6 - Ashbya gossypii (Yeast) (Eremothecium gossypii)
	Q6FW67	201792	204077	1017	43.19	70.80	n/a	Peroxisomal biogenesis factor 6 - Candida glabrata (Yeast) (Torulopsis glabrata)
blastx_uniprot_trembl	Q0PND8	201528	205691	1375	61.01	99.42	n/a	PEX6 protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q2HDS5	201528	205724	1421	58.67	99.79	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q4WX27	201747	205682	1442	55.99	91.40	n/a	Peroxisome biosynthesis protein - Aspergillus fumigatus (Sartorya fumigata)
	A1D7P9	201747	205682	1442	55.99	91.40	n/a	Peroxisome assembly factor-2 - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A1CJR6	201750	205682	1449	55.25	91.30	n/a	Peroxisome assembly factor-2 - Aspergillus clavatus
	Q0CX96	201765	205697	1439	54.66	91.66	n/a	Peroxisomal biogenesis factor 6 - Aspergillus terreus (strain NIH 2624)
	A2R722	201555	205682	1489	51.11	96.98	n/a	Contig An16c0080 complete genome - Aspergillus niger
	Q2UPU9	201741	205682	1476	53.97	89.63	n/a	Peroxisome assembly factor 2 containing the AAA+-type ATPase domain - Aspergillus oryzae
	Q5B955	201747	205745	1513	54.33	88.57	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
blastx_FNG30_prot	SS1G_01441.1	201528	205727	1390	85.87	99.78	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1391 aa
	FG05596.1	201528	204977	1139	61.29	99.56	n/a	fusarium_graminearum hypothetical protein 1140 aa
	MGG_00529.5	201528	205691	1375	61.01	99.42	n/a	magnaporthe_grisea hypothetical protein translation 1376 aa
	NCU08373.2	201528	205703	1381	59.29	99.42	n/a	Neurospora crassa hypothetical protein translation 1382 aa
	CHG01629.1	201528	205724	1421	58.67	99.79	n/a	Chaetomium globosum hypothetical protein translation 1422 aa
	jgi:Triree:30537	201618	205709	1360	58.71	99.56	n/a	Trichoderma reesei
	SNU04535.1	201618	205709	1408	53.57	99.57	n/a	Stagonospora nodorum hypothetical protein translation
	gi:71000221:ref:XP_754814.1:	201747	205682	1442	55.99	91.40	n/a	Aspergillus fumigatus Af293 peroxisome biosynthesis protein PAS8/Peroxin-6
	AN2925	201747	205745	1476	54.33	90.79	n/a	Aspergillus nidulans AN2925.3 conserved hypothetical protein translation 1477 aa
	AO090005001500	201741	205682	1476	53.97	89.63	n/a	Aspergillus oryzae peroxisome assembly factor 2 containing the AAA+-type ATPase domain
sim4_B0510_genes	BC1G_07982.1	204472	205745	1272	100.00	100.00	n/a	n/a
	BC1G_07984.1	201902	203234	1200	100.00	100.00	n/a	n/a
	BC1G_07983.1	203537	204053	426	100.00	100.00	n/a	n/a
	BC1G_07985.1	201525	201680	156	100.00	100.00	n/a	n/a
	BC1G_07985.1	201525	201680	156	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_01441.1	201583	205657	4173	83.91	81.62	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.43	201863	204454	262799	99.88	n/a	n/a	n/a
	B0510_supercontig_1.43	193386	201838	262799	99.99	n/a	n/a	n/a
	B0510_supercontig_1.43	204483	219948	262799	99.83	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	202180	203714	2719746	83.84	n/a	n/a	n/a
	SS_supercontig_1.2	204969	205506	2719746	83.27	n/a	n/a	n/a
	SS_supercontig_1.2	204134	204818	2719746	80.73	n/a	n/a	n/a
	SS_supercontig_1.2	204808	204934	2719746	92.91	n/a	n/a	n/a
	SS_supercontig_1.2	205582	205646	2719746	92.31	n/a	n/a	n/a
	SS_supercontig_1.2	203907	204062	2719746	82.05	n/a	n/a	n/a
	SS_supercontig_1.2	201512	202130	2719746	81.26	n/a	n/a	n/a
blat_oligo	botrytisP00129944	202998	203057	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:37.78 . min_over_threshold:2.25 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129945	202926	202985	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:19.59 . min_over_threshold:1.35 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129946	202820	202879	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:12.92 . min_over_threshold:1.09 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129947	202646	202705	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:38.08 . min_over_threshold:3.11 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129948	202477	202536	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:37.74 . min_over_threshold:2.76 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129950	202275	202334	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:94.6 . min_over_threshold:10.8 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129951	202109	202216	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:48.65 . min_over_threshold:3.39 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129952	202034	202093	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:44.44 . min_over_threshold:2.85 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129953	201810	201869	60	n/a	n/a	n/a	array_gene:BofuT4_P121850_1 . max_over_threshold:56.43 . min_over_threshold:3.35 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog