GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P121560.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_08011	1	662	662	n/a	100.00	662	94.56	0.00	0.0	hypothetical protein
	ssl:SS1G_01696	16	662	647	n/a	100.00	647	90.11	2.16	0.0	hypothetical protein
	pan:PODANSg4279	1	659	659	Gaps:23	95.40	696	62.50	10.54	0.0	hypothetical protein
	act:ACLA_069680	22	662	641	Gaps:12	98.34	664	62.17	8.58	0.0	MFS phosphate transporter putative
	ure:UREG_02395	22	660	639	Gaps:15	98.79	662	61.16	9.33	0.0	phosphate transporter A-1
	cim:CIMG_08126	22	638	617	Gaps:4	93.81	662	63.12	10.31	0.0	hypothetical protein
	ani:AN5935.2	14	632	619	Gaps:10	93.97	663	63.56	8.67	0.0	hypothetical protein
	afm:AFUA_2G10690	22	633	612	Gaps:6	92.79	666	64.08	8.41	0.0	MFS phosphate transporter
	ang:An02g02480	22	662	641	Gaps:13	98.35	665	60.55	9.48	0.0	hypothetical protein
	nfi:NFIA_086030	22	633	612	Gaps:8	92.79	666	64.08	8.25	0.0	MFS phosphate transporter putative
blastp_uniprot_sprot	sp\|Q9P6J9\|YHD1_SCHPO	73	550	478	Gaps:112	91.80	573	27.00	16.73	6e-29	Putative inorganic phosphate transporter C1683.01 OS Schizosaccharomyces pombe GN SPBC1683.01 PE 2 SV 1
	sp\|Q8GSD9\|PHT12_ORYSJ	173	550	378	Gaps:75	79.73	528	26.84	14.01	5e-26	Inorganic phosphate transporter 1-2 OS Oryza sativa subsp. japonica GN PTH1-2 PE 2 SV 1
	sp\|Q9ZWT3\|PHT16_ARATH	90	547	458	Gaps:63	95.54	516	27.79	14.00	6e-26	Probable inorganic phosphate transporter 1-6 OS Arabidopsis thaliana GN PHT1-6 PE 2 SV 1
	sp\|Q09852\|YAEC_SCHPO	350	565	216	Gaps:18	39.00	559	37.61	18.35	1e-25	Putative inorganic phosphate transporter C23D3.12 OS Schizosaccharomyces pombe GN SPAC23D3.12 PE 1 SV 1
	sp\|O42885\|YBN1_SCHPO	328	550	223	Gaps:20	40.03	572	37.12	18.34	8e-25	Putative inorganic phosphate transporter C8E4.01c OS Schizosaccharomyces pombe GN SPBC8E4.01c PE 1 SV 2
	sp\|Q69T94\|PT110_ORYSJ	173	574	402	Gaps:95	80.98	552	27.29	14.99	1e-24	Probable inorganic phosphate transporter 1-10 OS Oryza sativa subsp. japonica GN PHT1-10 PE 2 SV 1
	sp\|Q7XDZ7\|PHT13_ORYSJ	173	551	379	Gaps:79	80.61	526	26.89	15.57	2e-24	Probable inorganic phosphate transporter 1-3 OS Oryza sativa subsp. japonica GN PHT1-3 PE 2 SV 1
	sp\|Q8H6G7\|PHT19_ORYSJ	102	549	448	Gaps:101	86.77	582	25.94	14.46	4e-24	Probable inorganic phosphate transporter 1-9 OS Oryza sativa subsp. japonica GN PHT1-9 PE 2 SV 2
	sp\|Q9S735\|PHT19_ARATH	89	549	461	Gaps:105	95.49	532	25.98	16.93	5e-23	Probable inorganic phosphate transporter 1-9 OS Arabidopsis thaliana GN PHT1-9 PE 2 SV 1
	sp\|Q8H6H2\|PHT14_ORYSJ	102	518	417	Gaps:65	82.90	538	26.23	13.68	2e-22	Probable inorganic phosphate transporter 1-4 OS Oryza sativa subsp. japonica GN PHT1-4 PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|129965	99	547	449	Gaps:89	97.61	502	28.37	16.94	9e-53	TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
	gnl\|CDD\|143864	116	552	437	Gaps:86	97.77	449	21.18	17.31	8e-23	pfam00083 Sugar_tr Sugar (and other) transporter.
	gnl\|CDD\|119392	111	537	427	Gaps:83	97.73	352	22.09	14.24	3e-17	cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
	gnl\|CDD\|162084	80	547	468	Gaps:82	99.38	481	17.99	17.15	2e-12	TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
	gnl\|CDD\|162087	150	508	359	Gaps:56	82.49	394	21.23	18.46	2e-09	TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083) including citrate-H+ symporters dicarboxylate:H+ symporters the proline/glycine-betaine transporter ProP etc.
	gnl\|CDD\|162097	144	547	404	Gaps:121	75.84	505	20.89	20.37	2e-08	TIGR00898 2A0119 cation transport protein.
	gnl\|CDD\|148990	159	507	349	Gaps:46	87.83	345	17.82	15.51	5e-08	pfam07690 MFS_1 Major Facilitator Superfamily.
	gnl\|CDD\|162095	88	509	422	Gaps:96	98.49	398	24.49	16.07	3e-07	TIGR00895 2A0115 benzoate transport.
	gnl\|CDD\|162092	163	509	347	Gaps:51	79.51	405	22.05	14.91	3e-07	TIGR00891 2A0112 putative sialic acid transporter.
rpsblast_kog	gnl\|CDD\|35473	102	550	449	Gaps:69	88.10	538	30.38	17.09	3e-64	KOG0252 KOG0252 KOG0252 Inorganic phosphate transporter [Inorganic ion transport and metabolism].
	gnl\|CDD\|35476	95	562	468	Gaps:69	86.56	521	19.96	16.41	6e-19	KOG0255 KOG0255 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only].
	gnl\|CDD\|35475	146	563	418	Gaps:73	82.46	513	21.04	15.37	3e-14	KOG0254 KOG0254 KOG0254 Predicted transporter (major facilitator superfamily) [General function prediction only].
	gnl\|CDD\|35789	118	547	430	Gaps:63	90.93	485	18.37	14.29	5e-10	KOG0569 KOG0569 KOG0569 Permease of the major facilitator superfamily [Carbohydrate transport and metabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ADA7YI06CM1	139558	140241	684	99.85	100.00	n/a	B0510 mycelium - carbon sources library
	BcA1_3501_D11	140832	140895	64	100.00	100.00	n/a	BC A1 mycelium
	B1BC_045_036_H12	140030	140825	796	99.37	100.00	n/a	BC ATCC 58025 (G3)
	PD0ABA39YK04FM1	139710	140370	661	100.00	100.00	n/a	BT4 young mycelium library
	PD0ACA25YN09FM1	139841	140606	766	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0ACA3YG17FM1	139902	140568	667	100.00	100.00	n/a	BT4 mycelium - pH stress library
	B3BC_116_208_D03	139278	139911	634	99.84	100.00	n/a	B0510 Germinated spores on hydrophobic surfaces library
	B1BC_045_033_H09	139190	140022	836	98.44	100.00	n/a	BC ATCC 58025 (G3)
	B1BC_045_021_A04	139350	140011	663	99.70	100.00	n/a	BC ATCC 58025 (G3)
	PD0ACA16YJ03FM1	139188	139937	750	100.00	100.00	n/a	BT4 mycelium - pH stress library
	B1BC_045_027_F06	140720	141464	700	98.71	100.00	n/a	BC ATCC 58025 (G3)
	PD0ACA12YO17FM1	140706	141465	711	100.00	100.00	n/a	BT4 mycelium - pH stress library
sim4_Bot_allest4_clctg	CL_bt4_SupSuperContig_8_105_1_bt4ctg_1686_001.Contig1_v5	139188	141465	2230	99.96	100.00	n/a	all_lib_clone_nr:12
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q9ZWT3	139715	140902	516	31.78	82.95	n/a	Inorganic phosphate transporter 1-6 - Arabidopsis thaliana (Mouse-ear cress)
	Q494P0	139844	140902	535	31.40	70.84	n/a	Inorganic phosphate transporter 1-7 - Arabidopsis thaliana (Mouse-ear cress)
	O48639	139844	140902	521	29.58	73.32	n/a	Inorganic phosphate transporter 1-3 - Arabidopsis thaliana (Mouse-ear cress)
	Q96303	139844	140902	534	30.81	71.72	n/a	Inorganic phosphate transporter 1-4 - Arabidopsis thaliana (Mouse-ear cress)
	Q09852	139661	140308	559	39.63	38.82	n/a	Putative inorganic phosphate transporter C23D3.12 - Schizosaccharomyces pombe (Fission yeast)
	Q9P6J9	139706	140308	573	38.92	35.43	n/a	Putative inorganic phosphate transporter C1683.01 - Schizosaccharomyces pombe (Fission yeast)
	O42885	139706	140311	572	38.73	35.66	n/a	Putative inorganic phosphate transporter C8E4.01c - Schizosaccharomyces pombe (Fission yeast)
	P25346	139709	140899	518	28.27	72.39	n/a	Probable metabolite transport protein GIT1 - Saccharomyces cerevisiae (Baker's yeast)
blastx_uniprot_trembl	A1C6B6	139370	141341	664	66.16	98.34	n/a	MFS phosphate transporter putative - Aspergillus clavatus
	Q2U062	139460	141341	667	68.88	92.50	n/a	Permeases of the major facilitator superfamily - Aspergillus oryzae
	Q5B0J5	139460	141362	663	67.85	93.82	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q4X1A1	139460	141341	666	68.56	92.64	n/a	MFS phosphate transporter putative - Aspergillus fumigatus (Sartorya fumigata)
	A2QC69	139370	141341	665	64.53	98.35	n/a	Function: PT1 has a role in the acquisition of phosphate from the environment - Aspergillus niger
	A1DGZ1	139460	141341	666	68.40	92.64	n/a	MFS phosphate transporter putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q1DNI7	139442	141341	662	67.47	93.81	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q2H5T3	139457	141404	679	65.73	94.55	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
blastx_FNG30_prot	SS1G_01696.1	139370	141359	647	95.52	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 648 aa
	AO090011000572	139460	141341	667	68.88	92.50	n/a	Aspergillus oryzae permeases of the major facilitator superfamily
	AN5935	139460	141362	663	67.85	93.82	n/a	Aspergillus nidulans AN5935.3 conserved hypothetical protein translation 664 aa
	gi:71001442:ref:XP_755402.1:	139460	141341	666	68.56	92.64	n/a	Aspergillus fumigatus Af293 MFS phosphate transporter
	CIMG_08126.2	139442	141341	662	67.47	93.81	n/a	Coccidioides immitis hypothetical protein translation 663 aa
	CHG05982.1	139457	141404	679	65.73	94.55	n/a	Chaetomium globosum hypothetical protein translation 680 aa
	jgi:Triree:46119	139427	141386	655	63.65	96.18	n/a	Trichoderma reesei
	FG01311.1	139439	141392	670	63.03	95.67	n/a	fusarium_graminearum hypothetical protein 671 aa
	NCU07375.2	139454	141377	693	66.67	89.18	n/a	Neurospora crassa hypothetical protein translation 694 aa
	MGG_00346.5	139490	141407	731	63.64	87.28	n/a	magnaporthe_grisea hypothetical protein translation 732 aa
	MGG_00346.5	139490	141407	731	63.64	87.28	n/a	magnaporthe_grisea hypothetical protein translation 732 aa
sim4_B0510_genes	BC1G_08011.1	139367	141404	1989	99.90	100.00	n/a	n/a
sim4_SS_genes	SS1G_01696.1	139367	141359	1944	88.53	97.33	n/a	n/a
sim4_SS_genes	SS1G_01696.1	139367	141359	1944	88.53	97.33	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.43	138403	141584	262799	99.69	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	139358	141409	2719746	87.24	n/a	n/a	n/a
blat_oligo	botrytisP00129714	140716	140775	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:80 . min_over_threshold:17.57 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129715	140396	140455	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:196.94 . min_over_threshold:32.93 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129716	140271	140330	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:86.38 . min_over_threshold:8.66 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129717	140112	140171	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:143.17 . min_over_threshold:29.97 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00129718	139983	140042	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:151.63 . min_over_threshold:23.78 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129719	139815	139874	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:94.4 . min_over_threshold:10.08 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129720	139409	139468	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:28.67 . min_over_threshold:1.59 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129721	139402	139461	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:31.23 . min_over_threshold:2.01 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00129723	139388	139447	60	n/a	n/a	n/a	array_gene:BofuT4_P121560_1 . max_over_threshold:28.35 . min_over_threshold:2.08 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog