GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P098150.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_06982	1	940	940	Gaps:55	94.95	931	94.68	1.92	0.0	hypothetical protein
	pan:PODANSg831	1	940	940	Gaps:23	89.36	1062	57.22	14.23	0.0	hypothetical protein
	pan:PODANSg740	1	940	940	Gaps:68	95.39	1518	59.12	13.19	0.0	hypothetical protein
	pan:PODANSg4742	1	940	940	Gaps:58	93.21	1354	56.66	14.42	0.0	hypothetical protein
	pan:PODANSg8633	1	940	940	Gaps:35	94.57	1124	55.41	13.92	0.0	hypothetical protein
	pan:PODANSg8487	1	940	940	Gaps:48	96.36	1017	52.45	15.41	0.0	hypothetical protein
	ssl:SS1G_04917	248	940	693	Gaps:24	47.63	1581	56.71	16.33	0.0	hypothetical protein
	ssl:SS1G_05532	21	940	920	Gaps:81	98.24	1136	52.42	17.56	0.0	hypothetical protein
	pan:PODANSg550	249	957	709	Gaps:50	66.97	1314	54.89	17.39	0.0	hypothetical protein
	aor:AO090005000041	210	940	731	Gaps:64	69.92	1373	43.85	21.25	1e-169	WD40 repeat
blastp_uniprot_sprot	sp\|Q00808\|HETE1_PODAN	1	940	940	Gaps:36	92.55	1356	58.73	14.34	0.0	Vegetative incompatibility protein HET-E-1 OS Podospora anserina GN HET-E1 PE 4 SV 1
	sp\|P49695\|PKWA_THECU	778	940	163	Gaps:21	37.47	742	59.35	13.31	1e-28	Probable serine/threonine-protein kinase pkwA OS Thermomonospora curvata GN pkwA PE 3 SV 1
	sp\|Q8YRI1\|YY46_ANASP	781	940	160	Gaps:60	40.83	1526	57.95	16.69	1e-27	Uncharacterized WD repeat-containing protein alr3466 OS Anabaena sp. (strain PCC 7120) GN alr3466 PE 4 SV 1
	sp\|Q8YV57\|Y2124_ANASP	770	961	192	Gaps:102	34.40	1683	50.43	20.55	6e-26	Uncharacterized WD repeat-containing protein all2124 OS Anabaena sp. (strain PCC 7120) GN all2124 PE 4 SV 1
	sp\|Q8YTC2\|Y2800_ANASP	787	949	163	Gaps:70	46.42	1258	53.77	17.81	1e-23	Uncharacterized WD repeat-containing protein alr2800 OS Anabaena sp. (strain PCC 7120) GN alr2800 PE 4 SV 1
	sp\|Q55TS8\|NUDF_CRYNE	819	940	122	Gaps:34	67.67	433	42.66	19.11	6e-21	Nuclear distribution protein PAC1 OS Cryptococcus neoformans GN PAC1 PE 3 SV 1
	sp\|O76734\|TUP1_DICDI	784	940	157	Gaps:33	48.70	579	46.10	17.73	1e-20	General transcriptional corepressor tupA OS Dictyostelium discoideum GN tupA PE 2 SV 1
	sp\|Q5RFF8\|NLE1_PONAB	761	952	192	Gaps:45	76.08	485	41.73	22.22	2e-20	Notchless protein homolog 1 OS Pongo abelii GN NLE1 PE 2 SV 3
	sp\|Q54KL5\|WDR5_DICDI	782	940	159	Gaps:23	72.24	335	46.28	20.25	3e-20	WD repeat-containing protein 5 homolog OS Dictyostelium discoideum GN wdr5 PE 3 SV 1
	sp\|Q9NVX2\|NLE1_HUMAN	761	952	192	Gaps:45	76.08	485	41.46	22.49	6e-20	Notchless protein homolog 1 OS Homo sapiens GN NLE1 PE 1 SV 4
blastp_pdb	2co0_A	790	940	151	Gaps:17	82.22	315	42.47	24.71	7e-20	mol:protein length:315 WD-REPEAT PROTEIN 5
	2co0_C	790	940	151	Gaps:22	93.97	315	42.91	23.31	7e-20	mol:protein length:315 WD-REPEAT PROTEIN 5
	2cnx_A	790	940	151	Gaps:22	93.97	315	42.91	23.31	7e-20	mol:protein length:315 WD-REPEAT PROTEIN 5
	3emh_A	782	940	159	Gaps:22	94.03	318	43.14	22.07	1e-19	mol:protein length:318 WD repeat-containing protein 5
	2h9p_A	790	940	151	Gaps:22	89.97	329	42.91	22.64	2e-19	mol:protein length:329 WD-repeat protein 5
	2h9l_A	790	940	151	Gaps:22	89.97	329	42.91	22.64	2e-19	mol:protein length:329 WD-repeat protein 5
	3eg6_A	790	940	151	Gaps:22	94.87	312	42.91	22.64	3e-19	mol:protein length:312 WD repeat-containing protein 5
	2h6q_B	790	940	151	Gaps:22	94.87	312	42.91	22.64	3e-19	mol:protein length:312 WD-repeat protein 5
	2h6q_A	790	940	151	Gaps:22	94.87	312	42.91	22.64	3e-19	mol:protein length:312 WD-repeat protein 5
	2h6n_B	790	940	151	Gaps:22	94.87	312	42.91	22.64	3e-19	mol:protein length:312 WD-repeat protein 5
rpsblast_cdd	gnl\|CDD\|29257	820	940	121	Gaps:9	100.00	289	59.17	16.96	7e-33	cd00200 WD40 WD40 domain found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction pre-mRNA processing and cytoskeleton assembly typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long hence the name WD40 between GH and WD lies a conserved core serves as a stable propeller-like platform to which proteins can bind either stably or reversibly forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet instances with few detectable copies are hypothesized to form larger structures by dimerization each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands 7 copies of the repeat are present in this alignment..
	gnl\|CDD\|148545	27	148	122	Gaps:26	100.00	136	32.35	8.82	6e-32	pfam06985 HET Heterokaryon incompatibility protein (HET). This family represents a conserved region approximately 150 residues long within various heterokaryon incompatibility proteins that seem to be restricted to ascomycete fungi. Genetic differences in specific het genes prevent a viable heterokaryotic fungal cell from being formed by the fusion of filaments from two different wild-type strains. Many family members also contain the pfam00400 repeat and the pfam05729 domain.
	gnl\|CDD\|32473	818	960	143	Gaps:40	88.63	466	54.48	16.95	2e-21	COG2319 COG2319 FOG: WD40 repeat [General function prediction only].
	gnl\|CDD\|144115	823	901	79	n/a	92.31	39	72.22	11.11	8e-10	pfam00400 WD40 WD domain G-beta repeat.
	gnl\|CDD\|128615	823	901	79	n/a	90.00	40	69.44	13.89	3e-09	smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
	gnl\|CDD\|147726	298	486	189	Gaps:49	95.76	165	27.22	13.92	7e-08	pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
rpsblast_kog	gnl\|CDD\|35487	782	941	160	Gaps:47	64.04	456	45.55	20.21	1e-30	KOG0266 KOG0266 KOG0266 WD40 repeat-containing protein [General function prediction only].
	gnl\|CDD\|35492	782	952	171	Gaps:39	69.79	480	47.76	21.49	3e-27	KOG0271 KOG0271 KOG0271 Notchless-like WD40 repeat-containing protein [Function unknown].
	gnl\|CDD\|35500	819	940	122	Gaps:41	96.51	315	38.16	19.08	4e-26	KOG0279 KOG0279 KOG0279 G protein beta subunit-like protein [Signal transduction mechanisms].
	gnl\|CDD\|35484	820	940	121	Gaps:11	33.66	707	39.50	19.75	3e-25	KOG0263 KOG0263 KOG0263 Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription].
	gnl\|CDD\|35493	815	952	138	Gaps:18	64.49	459	39.19	17.91	6e-25	KOG0272 KOG0272 KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification].
	gnl\|CDD\|35516	808	940	133	Gaps:31	76.60	406	44.69	21.54	2e-20	KOG0295 KOG0295 KOG0295 WD40 repeat-containing protein [Function unknown].
	gnl\|CDD\|35521	822	975	154	Gaps:3	31.39	481	40.40	15.23	5e-20	KOG0300 KOG0300 KOG0300 WD40 repeat-containing protein [Function unknown].
	gnl\|CDD\|35514	820	971	152	Gaps:17	57.03	519	33.11	20.27	9e-20	KOG0293 KOG0293 KOG0293 WD40 repeat-containing protein [Function unknown].
	gnl\|CDD\|35495	819	941	123	Gaps:20	52.51	537	39.01	18.09	2e-19	KOG0274 KOG0274 KOG0274 Cdc4 and related F-box and WD-40 proteins [General function prediction only].
	gnl\|CDD\|35505	814	952	139	Gaps:19	61.21	464	33.45	23.94	5e-19	KOG0284 KOG0284 KOG0284 Polyadenylation factor I complex subunit PFS2 [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ABA7YN22FM1	41313	41931	619	99.19	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest	PD0ABA7YN22NM1r	41397	41973	603	90.45	95.52	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	PD0ABA7YN22FM1	41313	41931	619	99.19	100.00	n/a	BT4 young mycelium library
sim4_Ss_allest	G786P596RF8.T0	38929	39334	582	85.16	53.26	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P555RE11.T0	38929	39298	523	85.66	52.01	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P555FE11.T0	38929	39298	522	85.29	52.11	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P5104FE8.T0	38929	39149	415	85.52	53.25	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P588RB6.T0	38929	40545	375	84.29	56.00	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P588FB6.T0	38929	40545	374	84.29	56.15	n/a	Ss ESTs grown as mycelia at neutral pH
blastx_uniprot_sprot	Q8YRI1	41274	41969	1526	57.03	41.02	n/a	Uncharacterized WD repeat-containing protein alr3466 - Anabaena sp. (strain PCC 7120)
	P49695	41382	41969	742	58.28	39.08	n/a	Probable serine/threonine-protein kinase pkwA - Thermomonospora curvata
	Q8YV57	41271	41972	1683	46.29	34.40	n/a	Uncharacterized WD repeat-containing protein all2124 - Anabaena sp. (strain PCC 7120)
	Q8YTC2	41286	41972	1258	51.64	46.18	n/a	Uncharacterized WD repeat-containing protein alr2800 - Anabaena sp. (strain PCC 7120)
	Q498M4	41274	41972	334	44.44	91.62	n/a	WD repeat-containing protein 5 - Rattus norvegicus (Rat)
	P61965	41274	41972	334	44.44	91.62	n/a	WD repeat-containing protein 5 - Mus musculus (Mouse)
	P61964	41274	41972	334	44.44	91.62	n/a	WD repeat-containing protein 5 - Homo sapiens (Human)
	Q2KIG2	41274	41972	334	44.44	91.62	n/a	WD repeat-containing protein 5 - Bos taurus (Bovine)
	Q9V3J8	41394	41972	361	41.69	81.72	n/a	Protein will die slowly - Drosophila melanogaster (Fruit fly)
	Q00808	38862	41972	1356	58.14	93.73	n/a	Vegetative incompatibility protein HET-E-1 - Podospora anserina
blastx_uniprot_trembl	A7IQW2	38862	41972	1538	60.04	96.16	n/a	HNWD1 protein - Podospora anserina
	Q8X1P5	38862	41972	1356	58.22	93.73	n/a	Beta transducin-like protein HET-E2C - Podospora anserina
	Q8X1P4	38862	41972	1356	58.22	93.73	n/a	Beta transducin-like protein HET-E2C*4 - Podospora anserina
	Q8X1P3	38862	41972	1356	58.14	93.73	n/a	Beta transducin-like protein HET-E2C*40 - Podospora anserina
	Q8X1P2	38862	41972	1376	56.20	95.57	n/a	Beta transducin-like protein HET-D2Y - Podospora anserina
	A7IQW4	38862	41972	1117	55.59	94.54	n/a	HET-D protein - Podospora anserina
	A7IQW3	38862	41972	1062	56.91	92.00	n/a	HET-E protein - Podospora anserina
	Q8X1P6	38862	41972	1065	56.81	91.74	n/a	Beta transducin-like protein HET-E4s - Podospora anserina
	A7IQW1	38862	41972	1017	53.08	94.30	n/a	HNWD2 protein - Podospora anserina
blastx_FNG30_prot	SS1G_07150.1	38862	40520	568	53.69	97.71	n/a	sclerotinia_sclerotiorum hypothetical protein translation 569 aa
	jgi:Triree:9609	39603	41786	1090	45.29	64.22	n/a	Trichoderma reesei
	jgi:Triree:16461	39606	41945	1026	42.15	89.96	n/a	Trichoderma reesei
	SS1G_07150.1	38862	40520	568	53.69	97.71	n/a	sclerotinia_sclerotiorum hypothetical protein translation 569 aa
	jgi:Triree:13747	39606	41972	1113	50.89	90.57	n/a	Trichoderma reesei
	SS1G_08900.1	39603	41969	1096	59.06	73.54	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1097 aa
	gi:70986621:ref:XP_748801.1:	39600	41972	1454	50.52	72.83	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu7g07100
	AO090005000041	39606	41972	1373	43.26	71.89	n/a	Aspergillus oryzae WD40 repeat
	SS1G_04917.1	39603	41969	1581	57.37	47.63	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1582 aa
	SS1G_05532.1	38922	41969	1136	59.12	97.98	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1137 aa
	CHG08200.1	39612	41972	1552	50.23	69.27	n/a	Chaetomium globosum hypothetical protein translation 1553 aa
sim4_B0510_genes	BC1G_01119.1	41773	41889	1647	88.79	7.04	n/a	n/a
sim4_B0510_genes	BC1G_06982.1	38862	41973	2796	96.71	92.53	n/a	n/a
sim4_SS_genes	SS1G_11510.1	39731	41810	546	89.37	37.91	n/a	n/a
	SS1G_13373.1	39731	41812	474	89.86	43.67	n/a	n/a
	SS1G_14520.1	39731	41806	471	90.55	42.68	n/a	n/a
	SS1G_05624.1	39731	41812	546	90.00	38.46	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.37	41550	41848	302260	89.30	n/a	n/a	n/a
	B0510_supercontig_1.3	41687	41762	933704	94.74	n/a	n/a	n/a
	B0510_supercontig_1.3	41429	41502	933704	93.24	n/a	n/a	n/a
	B0510_supercontig_1.3	41558	41631	933704	93.24	n/a	n/a	n/a
	B0510_supercontig_1.3	41787	41889	933704	87.38	n/a	n/a	n/a
	B0510_supercontig_1.37	38609	41719	302260	96.50	n/a	n/a	n/a
	B0510_supercontig_1.37	41661	41972	302260	88.78	n/a	n/a	n/a
	B0510_supercontig_1.37	41811	41973	302260	92.02	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.18	38944	39195	983747	85.71	n/a	n/a	n/a
	SS_supercontig_1.18	39728	39962	983747	84.26	n/a	n/a	n/a
	SS_supercontig_1.18	39273	39550	983747	80.58	n/a	n/a	n/a
	SS_supercontig_1.18	41786	41899	983747	87.72	n/a	n/a	n/a
	SS_supercontig_1.18	41581	41672	983747	89.13	n/a	n/a	n/a
	SS_supercontig_1.18	39585	39642	983747	91.38	n/a	n/a	n/a
	SS_supercontig_1.18	41694	41803	983747	83.64	n/a	n/a	n/a
	SS_supercontig_1.10	39585	39962	1547569	82.54	n/a	n/a	n/a
	SS_supercontig_1.10	38944	39195	1547569	85.71	n/a	n/a	n/a
	SS_supercontig_1.10	39273	39550	1547569	80.94	n/a	n/a	n/a
	SS_supercontig_1.10	41790	41899	1547569	87.27	n/a	n/a	n/a
	SS_supercontig_1.10	41581	41659	1547569	91.14	n/a	n/a	n/a
	SS_supercontig_1.24	39585	39962	530567	82.54	n/a	n/a	n/a
	SS_supercontig_1.24	41786	41899	530567	87.72	n/a	n/a	n/a
	SS_supercontig_1.24	41581	41672	530567	89.13	n/a	n/a	n/a
	SS_supercontig_1.24	41694	41803	530567	83.64	n/a	n/a	n/a
	SS_supercontig_1.7	39585	39962	1946943	82.54	n/a	n/a	n/a
	SS_supercontig_1.7	38944	39195	1946943	85.32	n/a	n/a	n/a
	SS_supercontig_1.7	39273	39550	1946943	80.58	n/a	n/a	n/a
	SS_supercontig_1.7	41790	41899	1946943	87.27	n/a	n/a	n/a
	SS_supercontig_1.7	41581	41672	1946943	89.13	n/a	n/a	n/a
	SS_supercontig_1.7	41694	41803	1946943	83.64	n/a	n/a	n/a
	SS_supercontig_1.36	39585	39962	15843	82.28	n/a	n/a	n/a
	SS_supercontig_1.36	38932	39195	15843	84.85	n/a	n/a	n/a
	SS_supercontig_1.36	39273	39550	15843	80.58	n/a	n/a	n/a
	SS_supercontig_1.36	41786	41899	15843	87.72	n/a	n/a	n/a
	SS_supercontig_1.36	41581	41672	15843	89.13	n/a	n/a	n/a
	SS_supercontig_1.36	41694	41803	15843	83.64	n/a	n/a	n/a
blat_oligo	botrytisP00111469	40526	40585	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:19.16 . min_over_threshold:0.29 . percent_hyb_over_threshold:50 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111471	40536	40595	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:19.36 . min_over_threshold:0.32 . percent_hyb_over_threshold:50 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111472	40543	40602	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:26.01 . min_over_threshold:0.38 . percent_hyb_over_threshold:53.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111473	40817	40876	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:28.68 . min_over_threshold:1.16 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111474	40888	40947	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:45.83 . min_over_threshold:0.65 . percent_hyb_over_threshold:85.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111475	40903	40962	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:40.17 . min_over_threshold:0.55 . percent_hyb_over_threshold:85.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111476	40956	41015	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:11.17 . min_over_threshold:0.47 . percent_hyb_over_threshold:82.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111477	41030	41089	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:47.44 . min_over_threshold:0.41 . percent_hyb_over_threshold:78.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00111478	41219	41278	60	n/a	n/a	n/a	array_gene:BofuT4_P098150_1 . max_over_threshold:26.08 . min_over_threshold:2.39 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog