GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P091830.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_13505	1	265	265	n/a	22.86	1159	80.75	0.00	1e-112	hypothetical protein
	ssl:SS1G_11953	1	120	120	Gaps:1	12.65	941	84.87	5.88	6e-51	hypothetical protein
	pno:SNOG_12044	8	122	115	n/a	10.66	1079	73.04	11.30	8e-40	hypothetical protein
	fgr:FG07941.1	9	121	113	n/a	10.92	1035	71.68	12.39	1e-38	hypothetical protein
	ncr:NCU02356	26	120	95	Gaps:1	8.31	1131	80.85	8.51	3e-34	similar to white collar 1
	pan:PODANSg9294	13	122	110	Gaps:1	10.46	1042	77.98	8.26	1e-33	hypothetical protein
	mgr:MGG_03538	9	121	113	Gaps:5	10.09	1070	66.67	11.11	1e-29	MG03538.4 hypothetical protein
	tml:GSTUM_00007548001	34	120	87	n/a	9.95	874	70.11	17.24	1e-27	hypothetical protein
	ang:An11g10820	19	121	103	n/a	11.83	871	59.22	17.48	4e-26	hypothetical protein
	pcs:Pc20g08380	17	121	105	Gaps:3	12.44	852	60.38	16.04	2e-25	Pc20g08380
blastp_uniprot_sprot	sp\|Q01371\|WC1_NEUCR	26	121	96	Gaps:1	8.14	1167	81.05	8.42	4e-36	White collar 1 protein OS Neurospora crassa GN wc-1 PE 2 SV 2
	sp\|Q55C49\|GTAG_DICDI	43	122	80	Gaps:3	8.25	1006	38.55	18.07	8e-12	GATA zinc finger domain-containing protein 7 OS Dictyostelium discoideum GN gtaG PE 4 SV 1
	sp\|Q55GK0\|GTAE_DICDI	69	122	54	Gaps:3	5.99	952	49.12	14.04	6e-10	GATA zinc finger domain-containing protein 5 OS Dictyostelium discoideum GN gtaE PE 4 SV 1
	sp\|B0G188\|GTAP_DICDI	72	120	49	Gaps:1	7.19	695	54.00	14.00	7e-10	GATA zinc finger domain-containing protein 16 OS Dictyostelium discoideum GN gtaP PE 4 SV 1
	sp\|Q00858\|CGPB_FUSSO	73	122	50	n/a	10.94	457	50.00	24.00	9e-10	Cutinase gene palindrome-binding protein OS Fusarium solani subsp. pisi PE 2 SV 1
	sp\|Q54NM5\|GTAL_DICDI	69	122	54	Gaps:4	7.81	640	48.00	26.00	1e-09	GATA zinc finger domain-containing protein 12 OS Dictyostelium discoideum GN gtaL PE 4 SV 1
	sp\|Q75JZ0\|GTAH_DICDI	71	120	50	n/a	9.63	519	52.00	14.00	2e-09	GATA zinc finger domain-containing protein 8 OS Dictyostelium discoideum GN gtaH PE 4 SV 1
	sp\|P78714\|WC2_NEUCR	71	119	49	n/a	9.25	530	46.94	22.45	1e-08	White collar 2 protein OS Neurospora crassa GN wc-2 PE 1 SV 1
	sp\|Q54TE3\|GTAJ_DICDI	73	122	50	Gaps:2	7.28	714	46.15	19.23	6e-08	GATA zinc finger domain-containing protein 10 OS Dictyostelium discoideum GN gtaJ PE 4 SV 1
	sp\|Q5KSV0\|GTAK_DICDI	87	120	34	n/a	5.23	650	55.88	26.47	4e-07	GATA zinc finger domain-containing protein 11 OS Dictyostelium discoideum GN gtaK PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|109380	89	120	32	n/a	88.89	36	65.62	9.38	6e-12	pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
	gnl\|CDD\|128682	87	133	47	n/a	90.38	52	53.19	10.64	6e-12	smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
	gnl\|CDD\|29259	89	142	54	Gaps:1	98.15	54	43.40	15.09	2e-09	cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.
rpsblast_kog	no results

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	no results
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q01371	86918	87277	1167	68.91	10.20	n/a	White collar 1 protein - Neurospora crassa
blastx_uniprot_trembl	Q05JI3	86918	87331	1054	66.67	12.81	n/a	Blue light regulator 1 - Bipolaris oryzae
	Q64HK3	86918	87334	1020	64.08	13.92	n/a	Blue light regulator 1 - Trichoderma atroviride (Hypocrea atroviridis)
	Q0U870	86990	87355	1079	68.25	11.68	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A9Z0Q2	86990	87343	1020	71.19	11.57	n/a	White collar 1 - Fusarium oxysporum f. sp. lycopersici
	A7WPC2	86990	87343	1024	71.19	11.52	n/a	White collar 1-like protein - Gibberella fujikuroi (Bakanae and foot rot disease fungus) (Fusarium moniliforme)
	Q5PXG9	86918	87319	1040	64.96	13.17	n/a	White collar 1 - Trichoderma reesei (Hypocrea jecorina)
	Q86ZJ6	86990	87316	1042	78.70	10.36	n/a	Similar to WHITE COLLAR 1 PROTEIN from Neurospora crassa - Podospora anserina
	Q0U870	86990	87355	1079	68.25	11.68	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A4QRM6	86918	87430	1070	56.88	14.95	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
blastx_FNG30_prot	SS1G_11954.1	86138	86461	154	68.47	72.08	n/a	sclerotinia_sclerotiorum predicted protein translation 155 aa
	SNU12044.1	86918	87355	1082	60.67	13.86	n/a	Stagonospora nodorum hypothetical protein translation
	FG07941.1	86918	87343	1035	61.38	14.01	n/a	fusarium_graminearum hypothetical protein 1036 aa
	jgi:Triree:19211	86918	87319	875	64.96	15.66	n/a	Trichoderma reesei
	NCU02356.2	86918	87277	1167	68.91	10.20	n/a	Neurospora crassa WHITE COLLAR 1 PROTEIN WC1 translation 1168 aa
	gi:71000689:ref:XP_755026.1:	86954	87283	851	55.45	12.93	n/a	Aspergillus fumigatus Af293 GATA transcription factor LreA
	AO090020000046	86987	87244	282	63.95	30.50	n/a	Aspergillus oryzae predicted protein
	RO3G_14273.1	86993	87250	532	54.12	15.98	n/a	rhizopus_oryzae hypothetical protein translation 533 aa
	SS1G_11953.1	86921	87445	941	76.30	18.38	n/a	sclerotinia_sclerotiorum hypothetical protein translation 942 aa
	SNU12044.1	86918	87355	1082	60.67	13.86	n/a	Stagonospora nodorum hypothetical protein translation
	MGG_03538.5	86918	87430	1070	56.88	14.95	n/a	magnaporthe_grisea hypothetical protein translation 1071 aa
	AN3436	86987	87430	836	44.83	17.34	n/a	Aspergillus nidulans AN3436.3 hypothetical protein similar to GATA-factor translation 837 aa
sim4_B0510_genes	BC1G_13505.1	85989	87445	3480	99.90	29.48	n/a	n/a
sim4_SS_genes	SS1G_11953.1	86915	87327	2826	82.32	14.61	n/a	n/a
sim4_SS_genes	SS1G_11954.1	86223	87189	465	82.64	30.97	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.119	85359	87445	118397	99.81	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.20	86904	87313	846165	81.46	n/a	n/a	n/a
	SS_supercontig_1.20	86178	86326	846165	85.91	n/a	n/a	n/a
	SS_supercontig_1.20	86596	86716	846165	85.95	n/a	n/a	n/a
	SS_supercontig_1.20	86782	86836	846165	92.73	n/a	n/a	n/a
blat_oligo	botrytisP00106678	87287	87346	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:33.36 . min_over_threshold:0.93 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106680	86601	87011	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:55.11 . min_over_threshold:1.1 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106681	86596	87006	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:43.28 . min_over_threshold:1.33 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106682	86589	86999	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:59.49 . min_over_threshold:1.2 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106683	86585	86641	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:54.48 . min_over_threshold:0.97 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106684	86581	86640	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:45.27 . min_over_threshold:1.04 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106685	86573	86632	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:38.86 . min_over_threshold:1.02 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106686	86443	86502	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:26.78 . min_over_threshold:0.84 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00106687	86181	86240	60	n/a	n/a	n/a	array_gene:BofuT4_P091830_1 . max_over_threshold:39 . min_over_threshold:2.68 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog