GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P090450.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_14861	2	349	348	n/a	100.00	348	94.54	0.00	0.0	hypothetical protein K03124 transcription initiation factor TFIIB
	ssl:SS1G_01136	1	350	350	n/a	100.00	350	91.71	0.86	0.0	hypothetical protein K03124 transcription initiation factor TFIIB
	tml:GSTUM_00007773001	2	350	349	Gaps:5	100.00	346	64.45	11.27	1e-125	hypothetical protein K03124 transcription initiation factor TFIIB
	afm:AFUA_3G10620	12	350	339	Gaps:6	79.86	422	64.69	11.87	1e-121	transcription initiation protein K03124 transcription initiation factor TFIIB
	nfi:NFIA_066670	12	350	339	Gaps:6	96.29	350	64.69	11.87	1e-121	transcription initiation protein K03124 transcription initiation factor TFIIB
	act:ACLA_038510	12	350	339	Gaps:6	96.29	350	64.39	12.17	1e-120	transcription initiation protein K03124 transcription initiation factor TFIIB
	ang:An02g06230	12	350	339	Gaps:6	96.01	351	64.39	11.87	1e-119	hypothetical protein K03124 transcription initiation factor TFIIB
	afv:AFLA_032080	12	350	339	Gaps:6	96.29	350	63.50	13.06	1e-118	transcription initiation protein K03124 transcription initiation factor TFIIB
	aor:AO090003000606	12	350	339	Gaps:6	96.29	350	63.50	13.06	1e-118	transcription initiation factor TFIIB K03124 transcription initiation factor TFIIB
	ani:AN4928.2	13	350	338	Gaps:6	95.73	351	63.69	11.90	1e-118	hypothetical protein K03124 transcription initiation factor TFIIB
blastp_uniprot_sprot	sp\|O13749\|TF2B_SCHPO	17	348	332	Gaps:9	95.59	340	54.77	16.31	1e-95	Transcription initiation factor IIB OS Schizosaccharomyces pombe GN sua7 PE 2 SV 1
	sp\|Q05959\|TF2B_KLULA	16	348	333	Gaps:11	91.32	357	46.32	15.95	6e-76	Transcription initiation factor IIB OS Kluyveromyces lactis GN SUA7 PE 3 SV 1
	sp\|P29055\|TF2B_YEAST	1	348	348	Gaps:24	98.55	345	42.65	19.41	1e-71	Transcription initiation factor IIB OS Saccharomyces cerevisiae GN SUA7 PE 1 SV 1
	sp\|Q54FD6\|TF2B_DICDI	1	332	332	Gaps:23	95.08	325	43.69	19.42	8e-63	Transcription initiation factor IIB OS Dictyostelium discoideum GN gtf2b PE 3 SV 1
	sp\|P29054\|TF2B_XENLA	33	325	293	Gaps:26	85.76	316	45.39	20.30	2e-60	Transcription initiation factor IIB OS Xenopus laevis GN gtf2b PE 2 SV 1
	sp\|P29052\|TF2B_DROME	18	336	319	Gaps:30	93.65	315	44.07	18.31	2e-58	Transcription initiation factor IIB OS Drosophila melanogaster GN TfIIB PE 1 SV 1
	sp\|Q5R886\|TF2B_PONAB	33	325	293	Gaps:26	85.76	316	43.91	21.03	3e-58	Transcription initiation factor IIB OS Pongo abelii GN GTF2B PE 2 SV 1
	sp\|Q4R3J5\|TF2B_MACFA	33	325	293	Gaps:26	85.76	316	43.91	21.03	3e-58	Transcription initiation factor IIB OS Macaca fascicularis GN GTF2B PE 2 SV 1
	sp\|Q00403\|TF2B_HUMAN	33	325	293	Gaps:26	85.76	316	43.91	21.03	3e-58	Transcription initiation factor IIB OS Homo sapiens GN GTF2B PE 1 SV 1
	sp\|P62916\|TF2B_RAT	33	325	293	Gaps:26	85.76	316	43.91	21.03	3e-58	Transcription initiation factor IIB OS Rattus norvegicus GN Gtf2b PE 2 SV 1
blastp_pdb	3k7a_M	1	348	348	Gaps:24	98.55	345	42.65	19.41	2e-72	mol:protein length:345 Transcription initiation factor IIB
	1c9b_Q	119	325	207	Gaps:25	88.89	207	43.48	22.83	3e-35	mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
	1c9b_M	119	325	207	Gaps:25	88.89	207	43.48	22.83	3e-35	mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
	1c9b_I	119	325	207	Gaps:25	88.89	207	43.48	22.83	3e-35	mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
	1c9b_E	119	325	207	Gaps:25	88.89	207	43.48	22.83	3e-35	mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
	1c9b_A	119	325	207	Gaps:25	88.89	207	43.48	22.83	3e-35	mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
	1tfb_A	119	325	207	Gaps:25	88.46	208	42.93	23.91	4e-35	mol:protein length:208 TFIIB
	2phg_A	120	325	206	Gaps:25	88.83	206	43.17	23.50	5e-35	mol:protein length:206 Transcription initiation factor IIB
	1vol_A	122	325	204	Gaps:25	88.73	204	42.54	22.65	4e-33	mol:protein length:204 PROTEIN (TRANSCRIPTION FACTOR IIB (TFIIB))
	1d3u_B	116	324	209	Gaps:21	93.53	201	28.72	27.66	1e-17	mol:protein length:201 TRANSCRIPTION INITIATION FACTOR IIB
rpsblast_cdd	gnl\|CDD\|31595	23	338	316	Gaps:39	97.89	285	34.77	21.51	2e-57	COG1405 SUA7 Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB [Transcription].
	gnl\|CDD\|166955	24	324	301	Gaps:38	93.23	310	30.80	22.49	8e-45	PRK00423 tfb transcription initiation factor IIB Reviewed.
	gnl\|CDD\|109440	134	317	184	Gaps:1	98.59	71	68.57	10.00	2e-15	pfam00382 TFIIB Transcription factor TFIIB repeat.
	gnl\|CDD\|28924	126	325	200	Gaps:3	97.73	88	32.56	24.42	2e-07	cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins TFIIB and RB contain 2 copies of the domain..
rpsblast_kog	gnl\|CDD\|36810	23	338	316	Gaps:25	95.78	308	48.81	16.27	4e-85	KOG1597 KOG1597 KOG1597 Transcription initiation factor TFIIB [Transcription].
rpsblast_kog	gnl\|CDD\|36811	21	322	302	Gaps:64	47.60	521	22.18	21.77	2e-11	KOG1598 KOG1598 KOG1598 Transcription initiation factor TFIIIB Brf1 subunit [Transcription].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCOA_571427	172025	172668	589	99.66	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572277	172036	172620	530	99.81	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ABA32YP15FM1	171891	172463	573	99.48	100.00	n/a	BT4 young mycelium library
	YCMA_548510	171627	172328	702	99.86	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_557161	171627	172286	660	99.55	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_562796	171627	172245	619	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_568357	171627	172196	570	99.65	100.00	n/a	Botrytis cinerea HortResearch libraries
	BcA1_3475_B07	171732	172125	685	93.23	58.25	n/a	BC A1 mycelium
	PD0ABA28YB15FM1	171118	171874	757	100.00	100.00	n/a	BT4 young mycelium library
	PD0AHA9YM04CM1	171553	172178	626	99.84	100.00	n/a	BT4 appressoria on teflon library
	AL117101	172764	173211	448	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA1YC23NM1r	172418	173237	764	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA1YC23FM1	172410	173171	707	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA34YF23FM1	172256	173005	695	100.00	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_143_1_bt4ctg_1216_006.Contig1_v5	171118	173270	2098	99.90	100.00	n/a	all_lib_clone_nr:7
sim4_Ss_allest	G786P586RA2.T0	171649	172468	818	88.33	99.51	n/a	Ss ESTs grown as mycelia at neutral pH
	G787P593FC12.T0	172397	173162	831	88.76	80.26	n/a	Ss ESTs grown as developing apothecia
	G781P553FB5.T0	172571	173162	730	86.82	81.10	n/a	Ss ESTs grown as developing sclerotia
	G786P586FA2.T0	172571	173143	817	88.16	50.67	n/a	Ss ESTs grown as mycelia at neutral pH
blastx_uniprot_sprot	O13749	171867	172917	340	56.00	95.59	n/a	Transcription initiation factor IIB - Schizosaccharomyces pombe (Fission yeast)
	Q05959	171864	172917	357	47.22	90.76	n/a	Transcription initiation factor IIB - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	P29055	171819	172463	345	47.71	63.19	n/a	Transcription initiation factor IIB - Saccharomyces cerevisiae (Baker's yeast)
	P29054	171915	172445	316	48.88	56.33	n/a	Transcription initiation factor IIB - Xenopus laevis (African clawed frog)
	P29052	171870	172433	315	49.20	59.37	n/a	Transcription initiation factor IIB - Drosophila melanogaster (Fruit fly)
	P62916	171915	172445	316	47.19	56.33	n/a	Transcription initiation factor IIB - Rattus norvegicus (Rat)
	Q5R886	171915	172445	316	47.19	56.33	n/a	Transcription initiation factor IIB - Pongo pygmaeus (Orangutan)
	P62915	171915	172445	316	47.19	56.33	n/a	Transcription initiation factor IIB - Mus musculus (Mouse)
	Q00403	171915	172445	316	47.19	56.33	n/a	Transcription initiation factor IIB - Homo sapiens (Human)
	P48512	171885	172887	312	39.59	93.91	n/a	Transcription initiation factor IIB-1 - Arabidopsis thaliana (Mouse-ear cress)
	P29055	171819	172463	345	47.71	63.19	n/a	Transcription initiation factor IIB - Saccharomyces cerevisiae (Baker's yeast)
blastx_uniprot_trembl	A1D706	171852	172923	350	65.96	94.86	n/a	Transcription initiation protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WXT4	171852	172923	422	65.96	78.67	n/a	Transcription initiation protein - Aspergillus fumigatus (Sartorya fumigata)
	A1CKG6	171852	172923	350	65.66	94.86	n/a	Transcription initiation protein - Aspergillus clavatus
	A2QD90	171852	172923	351	65.66	94.59	n/a	Complex: TFIIB binds directly to TBP - Aspergillus niger
	Q2UKZ7	171852	172923	350	64.76	94.86	n/a	Transcription initiation factor TFIIB - Aspergillus oryzae
	Q5B3F2	171855	172923	351	65.26	94.30	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	A6RGN6	171855	172923	352	63.03	93.75	n/a	Transcription initiation factor IIB - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	Q1E1D6	171855	172917	353	63.41	92.92	n/a	Putative uncharacterized protein - Coccidioides immitis
blastx_FNG30_prot	SS1G_01136.1	171819	172923	350	95.71	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 351 aa
	gi:70999680:ref:XP_754557.1:	171852	172923	422	65.96	78.67	n/a	Aspergillus fumigatus Af293 transcription initiation protein
	AO090003000606	171852	172923	350	64.76	94.86	n/a	Aspergillus oryzae transcription initiation factor TFIIB
	AN4928	171855	172923	351	65.26	94.30	n/a	Aspergillus nidulans AN4928.3 conserved hypothetical protein translation 352 aa
	CIMG_03627.2	171855	172917	353	63.41	92.92	n/a	Coccidioides immitis conserved hypothetical protein translation 354 aa
	SNU07914.1	171852	172911	360	57.41	90.00	n/a	Stagonospora nodorum hypothetical protein translation
	jgi:Triree:31825	171849	172917	338	57.59	95.56	n/a	Trichoderma reesei
	CHG04440.1	171843	172878	353	59.94	89.80	n/a	Chaetomium globosum hypothetical protein translation 354 aa
	FG00597.1	171822	172917	348	56.16	95.69	n/a	fusarium_graminearum hypothetical protein 349 aa
	gi:19115141:ref:NP_594229.1:	171867	172917	340	56.00	95.59	n/a	hypothetical protein SPAC16E8.16 [Schizosaccharomyces pombe 972h-]
	SS1G_01136.1	171819	172923	350	95.71	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 351 aa
sim4_B0510_genes	BC1G_14861.1	171822	172921	1047	99.62	100.00	n/a	n/a
sim4_SS_genes	SS1G_01136.1	171834	172926	1053	90.44	94.40	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.156	168632	173335	80940	99.62	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	171615	172948	2719746	89.58	n/a	n/a	n/a
blat_oligo	botrytisP00105628	171850	171909	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:85.82 . min_over_threshold:15.43 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105629	172098	172157	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:72.14 . min_over_threshold:9.57 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105630	172183	172242	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:101.93 . min_over_threshold:17.35 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105631	172339	172398	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:89.07 . min_over_threshold:3.03 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105632	172482	172596	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:37.85 . min_over_threshold:4.5 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105633	172603	172662	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:50.19 . min_over_threshold:4.47 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105634	172695	172754	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:53.46 . min_over_threshold:3.81 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105635	172787	172846	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:51.86 . min_over_threshold:2.05 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00105637	172807	172866	60	n/a	n/a	n/a	array_gene:BofuT4_P090450_1 . max_over_threshold:54.66 . min_over_threshold:3.97 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog