GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P087280.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_09523	1	351	351	n/a	98.32	357	94.87	0.28	0.0	hypothetical protein K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	act:ACLA_043170	39	368	330	Gaps:5	91.04	357	59.69	15.38	1e-107	glyceraldehyde-3-phosphate dehydrogenase putative K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	ani:AN2583.2	39	359	321	Gaps:5	89.27	354	60.13	15.51	1e-107	hypothetical protein K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	afv:AFLA_101470	39	367	329	Gaps:5	90.50	358	60.19	13.27	1e-106	glyceraldehyde-3-phosphate dehydrogenase putative K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	aor:AO090020000265	39	367	329	Gaps:5	90.50	358	60.19	13.27	1e-106	glyceraldehyde 3-phosphate dehydrogenase K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	nfi:NFIA_096280	39	368	330	Gaps:5	85.75	379	59.38	16.00	1e-106	glyceraldehyde-3-phosphate dehydrogenase putative K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	afm:AFUA_8G02560	39	368	330	Gaps:5	90.28	360	59.38	15.38	1e-106	glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	cne:CNI00320	40	367	328	Gaps:15	85.08	382	53.85	12.92	2e-83	glyceraldehyde 3-phosphate dehydrogenase K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	cnb:CNBH0320	40	367	328	Gaps:15	85.08	382	53.85	12.92	2e-83	hypothetical protein K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
	dha:DEHA2F04796g	39	360	322	Gaps:11	92.84	335	48.87	18.97	2e-78	DEHA2F04796p K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
blastp_uniprot_sprot	sp\|Q6BMK0\|G3P_DEBHA	39	360	322	Gaps:11	92.84	335	48.87	18.97	2e-79	Glyceraldehyde-3-phosphate dehydrogenase OS Debaryomyces hansenii GN GPD PE 3 SV 1
	sp\|Q96UF1\|G3P3_RHIRA	40	367	328	Gaps:12	93.81	339	47.17	20.75	1e-78	Glyceraldehyde-3-phosphate dehydrogenase 3 OS Rhizomucor racemosus GN GPD3 PE 3 SV 1
	sp\|P09317\|G3P_USTMA	39	367	329	Gaps:11	94.36	337	46.54	19.81	5e-78	Glyceraldehyde-3-phosphate dehydrogenase OS Ustilago maydis GN GAPD PE 3 SV 2
	sp\|Q9UR38\|G3P_LENED	39	367	329	Gaps:11	94.36	337	45.91	21.70	6e-78	Glyceraldehyde-3-phosphate dehydrogenase OS Lentinula edodes GN gpd PE 2 SV 1
	sp\|Q92263\|G3P_PICPA	39	360	322	Gaps:11	93.39	333	47.91	21.22	2e-77	Glyceraldehyde-3-phosphate dehydrogenase OS Pichia pastoris GN GPD PE 3 SV 1
	sp\|Q9UVC0\|G3P_PICCI	39	367	329	Gaps:11	95.21	334	46.23	22.33	2e-77	Glyceraldehyde-3-phosphate dehydrogenase OS Pichia ciferrii GN GPD PE 3 SV 1
	sp\|Q6CCU7\|G3P_YARLI	39	367	329	Gaps:12	94.38	338	47.34	18.18	4e-77	Glyceraldehyde-3-phosphate dehydrogenase OS Yarrowia lipolytica GN GPD PE 3 SV 1
	sp\|O59841\|G3P_PICAN	39	360	322	Gaps:11	92.84	335	46.62	21.22	6e-77	Glyceraldehyde-3-phosphate dehydrogenase OS Pichia angusta GN GPD PE 3 SV 1
	sp\|P34923\|G3PC_PHYPA	41	366	326	Gaps:10	92.40	342	46.52	20.25	1e-76	Glyceraldehyde-3-phosphate dehydrogenase cytosolic OS Physcomitrella patens GN GAPC PE 2 SV 1
	sp\|Q6CX23\|G3P2_KLULA	39	360	322	Gaps:12	93.66	331	47.10	20.65	1e-76	Glyceraldehyde-3-phosphate dehydrogenase 2 OS Kluyveromyces lactis GN GAP2 PE 3 SV 1
blastp_pdb	2i5p_P	39	360	322	Gaps:14	90.64	342	46.77	21.29	1e-74	mol:protein length:342 Glyceraldehyde-3-phosphate dehydrogenase 1
	2i5p_O	39	360	322	Gaps:14	90.64	342	46.77	21.29	1e-74	mol:protein length:342 Glyceraldehyde-3-phosphate dehydrogenase 1
	4gpd_4	39	367	329	Gaps:12	95.20	333	45.11	21.77	3e-73	mol:protein length:333 APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS
	4gpd_3	39	367	329	Gaps:12	95.20	333	45.11	21.77	3e-73	mol:protein length:333 APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS
	4gpd_2	39	367	329	Gaps:12	95.20	333	45.11	21.77	3e-73	mol:protein length:333 APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS
	4gpd_1	39	367	329	Gaps:12	95.20	333	45.11	21.77	3e-73	mol:protein length:333 APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS
	1gpd_R	39	367	329	Gaps:12	94.91	334	45.11	21.77	3e-73	mol:protein length:334 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
	1gpd_G	39	367	329	Gaps:12	94.91	334	45.11	21.77	3e-73	mol:protein length:334 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
	1szj_R	39	367	329	Gaps:12	95.20	333	45.43	21.14	5e-73	mol:protein length:333 D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE
	1szj_G	39	367	329	Gaps:12	95.20	333	45.43	21.14	5e-73	mol:protein length:333 D-GLYCERALDEHYDE-3-PHOSPHATE-DEHYDROGENASE
rpsblast_cdd	gnl\|CDD\|162405	27	358	332	Gaps:18	99.69	327	49.69	17.48	1e-105	TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase type I. The noise level is set relative not to E4PD but the next closest outliers the class II GAPDH's (found in archaea TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
	gnl\|CDD\|30406	27	367	341	Gaps:14	98.81	335	49.55	18.13	3e-99	COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].
	gnl\|CDD\|165914	21	363	343	Gaps:10	78.91	422	47.45	19.82	5e-92	PLN02272 PLN02272 glyceraldehyde-3-phosphate dehydrogenase.
	gnl\|CDD\|173322	27	367	341	Gaps:14	98.81	337	45.65	18.92	2e-91	PTZ00023 PTZ00023 glyceraldehyde-3-phosphate dehydrogenase Provisional.
	gnl\|CDD\|169075	25	366	342	Gaps:13	96.50	343	43.81	18.73	3e-84	PRK07729 PRK07729 glyceraldehyde-3-phosphate dehydrogenase Validated.
	gnl\|CDD\|165881	27	359	333	Gaps:16	81.25	400	46.77	16.62	5e-79	PLN02237 PLN02237 glyceraldehyde-3-phosphate dehydrogenase.
	gnl\|CDD\|136336	27	359	333	Gaps:16	96.44	337	46.15	17.23	1e-76	PRK07403 PRK07403 glyceraldehyde-3-phosphate dehydrogenase Reviewed.
	gnl\|CDD\|165999	27	364	338	Gaps:9	97.34	338	44.38	20.97	2e-76	PLN02358 PLN02358 glyceraldehyde-3-phosphate dehydrogenase.
	gnl\|CDD\|169599	27	355	329	Gaps:15	95.21	334	40.25	18.24	6e-68	PRK08955 PRK08955 glyceraldehyde-3-phosphate dehydrogenase Validated.
	gnl\|CDD\|130595	27	358	332	Gaps:18	99.69	325	37.96	18.21	1e-62	TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly this model is very close to the corresponding models for GAPDH and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively some of the GAPDH enzymes may prove to be bifunctional in certain species.
rpsblast_kog	gnl\|CDD\|35876	35	365	331	Gaps:47	99.65	285	44.72	16.20	2e-56	KOG0657 KOG0657 KOG0657 Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ABA5YI18FM1	59929	60595	667	100.00	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest	PD0ABA5YI18NM1r	59517	60375	809	99.63	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_137_1_bt4ctg_1159_004.Contig1_v5	59517	60595	1029	99.71	100.00	n/a	all_lib_clone_nr:1
sim4_Ss_allest	no results
blastx_uniprot_sprot	P09317	59542	60679	337	48.34	98.22	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Ustilago maydis (Smut fungus)
	Q9UR38	59542	60676	337	47.58	97.92	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Lentinula edodes (Shiitake mushroom) (Lentinus edodes)
	Q9UVC0	59542	60676	334	48.18	98.80	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Pichia ciferrii (Yeast)
	Q92263	59563	60676	333	49.85	97.00	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Pichia pastoris (Yeast)
	Q6BMK0	59563	60587	335	49.36	93.73	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
	O59841	59563	60682	335	48.62	97.01	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Pichia angusta (Yeast) (Hansenula polymorpha)
	Q6CX23	59563	60676	331	49.38	97.28	n/a	Glyceraldehyde-3-phosphate dehydrogenase 2 - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	P34923	59545	60676	342	48.32	95.61	n/a	Glyceraldehyde-3-phosphate dehydrogenase cytosolic - Physcomitrella patens (Moss)
	Q6CCU7	59542	60676	338	48.94	97.93	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Yarrowia lipolytica (Candida lipolytica)
	P49644	59566	60676	341	49.23	94.72	n/a	Glyceraldehyde-3-phosphate dehydrogenase cytosolic - Chlamydomonas reinhardtii
blastx_uniprot_trembl	A1C8G2	59539	60754	357	59.10	100.00	n/a	Glyceraldehyde-3-phosphate dehydrogenase putative - Aspergillus clavatus
	Q2U4N7	59542	60676	358	61.31	93.85	n/a	Glyceraldehyde 3-phosphate dehydrogenase - Aspergillus oryzae
	Q5BA47	59566	60703	354	60.12	94.92	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q4WBK0	59539	60676	360	60.83	93.61	n/a	Glyceraldehyde-3-phosphate dehydrogenase putative - Aspergillus fumigatus (Sartorya fumigata)
	A1DAW6	59539	60676	379	60.95	89.18	n/a	Glyceraldehyde-3-phosphate dehydrogenase putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q5KC42	59542	60676	382	55.03	88.48	n/a	Glyceraldehyde 3-phosphate dehydrogenase - Cryptococcus neoformans (Filobasidiella neoformans)
	Q55NQ7	59542	60676	382	55.03	88.48	n/a	Glyceraldehyde 3-phosphate dehydrogenase - Cryptococcus neoformans (Filobasidiella neoformans)
	A9DUM5	59548	60676	331	50.76	98.79	n/a	Glyceraldehyde-3-phosphate dehydrogenase - Kordia algicida OT-1
	A7QMH9	59554	60694	429	48.35	77.62	n/a	Chromosome chr19 scaffold_126 whole genome shotgun sequence - Vitis vinifera (Grape)
blastx_FNG30_prot	AO090020000265	59542	60676	358	61.31	93.85	n/a	Aspergillus oryzae glyceraldehyde 3-phosphate dehydrogenase
	AN2583	59566	60703	354	60.12	94.92	n/a	Aspergillus nidulans AN2583.3 conserved hypothetical protein translation 355 aa
	gi:70982845:ref:XP_746950.1:	59539	60676	360	60.83	93.61	n/a	Aspergillus fumigatus Af293 glyceraldehyde-3-phosphate dehydrogenase
	gi:58271224:ref:XP_572768.1	59542	60676	382	55.03	88.48	n/a	Cryptococcus neoformans var. neoformans JEC21 glyceraldehyde 3-phosphate dehydrogenase
	UM02491.1	59542	60679	337	48.34	98.22	n/a	ustilago_maydis G3P_USTMA Glyceraldehyde 3-phosphate dehydrogenase GAPDH 338 aa
	CLUG_03499.1	59563	60676	332	51.24	96.99	n/a	Candida lusitaniae glyceraldehyde-3-phosphate dehydrogenase translation 333 aa
	RO3G_15197.1	59542	60682	335	48.49	99.10	n/a	rhizopus_oryzae conserved hypothetical protein translation 336 aa
	gi:50423973:ref:XP_460571.1	59563	60587	335	49.36	93.73	n/a	Debaryomyces hansenii CBS767 hypothetical protein DEHA0F05258g
	gi:50310947:ref:XP_455496.1	59530	60721	356	46.57	98.31	n/a	Kluyveromyces lactis unnamed protein product
	ORFP:Sklu_Contig2004.2	59542	60688	350	48.96	96.29	n/a	Saccharomyces kluyveri Contig c2004 1290-2342 reverse complement
sim4_B0510_genes	no results
sim4_SS_genes	no results
blastn_b0510_supercontig	B0510_supercontig_1.63	54979	67795	243052	99.98	n/a	n/a	n/a
blastn_SS_supercontig	no results
blat_oligo	botrytisP00103418	60560	60681	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:2.7 . min_over_threshold:0.49 . percent_hyb_over_threshold:50 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103419	60436	60495	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:2.66 . min_over_threshold:0.57 . percent_hyb_over_threshold:60.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103421	60306	60365	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:1.47 . min_over_threshold:0.4 . percent_hyb_over_threshold:17.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103422	60117	60176	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:1.74 . min_over_threshold:0.35 . percent_hyb_over_threshold:28.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103423	59985	60044	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:1.16 . min_over_threshold:0.4 . percent_hyb_over_threshold:21.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103424	59981	60040	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:1.31 . min_over_threshold:0.39 . percent_hyb_over_threshold:17.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103425	59872	59931	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:5.35 . min_over_threshold:0.8 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103426	59701	59760	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:3.16 . min_over_threshold:0.61 . percent_hyb_over_threshold:78.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00103427	59558	59617	60	n/a	n/a	n/a	array_gene:BofuT4_P087280_1 . max_over_threshold:1.68 . min_over_threshold:0.49 . percent_hyb_over_threshold:28.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog