GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P079000.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_13386	1	179	179	n/a	28.64	625	99.44	0.00	7e-99	hypothetical protein
	ang:An08g08250	1	179	179	Gaps:6	29.01	617	44.13	19.55	3e-38	hypothetical protein
	pno:SNOG_00981	5	175	171	Gaps:5	28.48	618	42.61	19.89	2e-37	hypothetical protein
	ang:An02g00400	10	175	166	n/a	27.30	608	40.96	19.28	1e-33	hypothetical protein
	pno:SNOG_14291	19	177	159	Gaps:4	26.01	596	44.52	22.58	1e-32	hypothetical protein
	fgr:FG03626.1	21	176	156	Gaps:3	25.59	598	43.79	20.92	2e-32	hypothetical protein
	afm:AFUA_4G00610	18	176	159	Gaps:13	26.29	601	44.94	18.35	2e-32	aryl-alcohol dehydrogenase (EC:1.1.-.-) K00120 [EC:1.1.-.-]
	act:ACLA_078430	18	176	159	Gaps:13	25.57	618	43.04	18.99	1e-31	aryl-alcohol dehydrogenase putative
	nfi:NFIA_045070	18	176	159	Gaps:13	26.29	601	44.30	18.35	2e-31	aryl-alcohol dehydrogenase putative
	pan:PODANSg1225	16	178	163	Gaps:1	26.75	613	39.02	23.17	2e-31	hypothetical protein
blastp_uniprot_sprot	sp\|P13006\|GOX_ASPNG	10	178	169	Gaps:9	27.77	605	33.93	20.83	5e-17	Glucose oxidase OS Aspergillus niger GN gox PE 1 SV 1
	sp\|Q8NE62\|CHDH_HUMAN	33	175	143	Gaps:4	23.74	594	34.75	18.44	1e-16	Choline dehydrogenase mitochondrial OS Homo sapiens GN CHDH PE 2 SV 2
	sp\|P81156\|GOX_PENAG	31	178	148	Gaps:7	25.38	587	32.21	19.46	8e-16	Glucose oxidase OS Penicillium amagasakiense PE 1 SV 1
	sp\|Q92452\|GOX_TALFL	31	178	148	Gaps:7	24.63	605	32.21	19.46	9e-16	Glucose oxidase OS Talaromyces flavus GN GOX PE 3 SV 1
	sp\|A6X2G7\|BETA_OCHA4	33	176	144	Gaps:4	25.87	549	34.51	17.61	1e-15	Choline dehydrogenase OS Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN betA PE 3 SV 1
	sp\|A8AJN0\|BETA_CITK8	21	175	155	Gaps:5	26.88	558	33.33	17.33	3e-15	Choline dehydrogenase OS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN betA PE 3 SV 1
	sp\|B3PTE0\|BETA_RHIE6	33	179	147	Gaps:4	26.41	549	34.48	13.79	5e-15	Choline dehydrogenase OS Rhizobium etli (strain CIAT 652) GN betA PE 3 SV 1
	sp\|Q8G1Z8\|BETA_BRUSU	33	176	144	Gaps:4	25.87	549	33.80	16.90	5e-15	Choline dehydrogenase OS Brucella suis GN betA PE 3 SV 1
	sp\|A9M9H8\|BETA_BRUC2	33	176	144	Gaps:4	25.87	549	33.80	16.90	5e-15	Choline dehydrogenase OS Brucella canis (strain ATCC 23365 / NCTC 10854) GN betA PE 3 SV 1
	sp\|Q8D3K2\|BETA_VIBVU	31	179	149	Gaps:4	26.25	560	32.65	17.69	5e-15	Choline dehydrogenase OS Vibrio vulnificus GN betA PE 3 SV 1
blastp_pdb	3fim_B	9	179	171	Gaps:11	30.74	566	32.76	22.99	4e-20	mol:protein length:566 Aryl-alcohol oxidase
	1gal_A	10	178	169	Gaps:9	28.82	583	33.93	20.83	1e-17	mol:protein length:583 GLUCOSE OXIDASE
	1cf3_A	10	178	169	Gaps:9	28.82	583	33.93	20.83	1e-17	mol:protein length:583 PROTEIN (GLUCOSE OXIDASE)
	1gpe_B	31	178	148	Gaps:7	25.38	587	32.21	19.46	2e-16	mol:protein length:587 PROTEIN (GLUCOSE OXIDASE)
	1gpe_A	31	178	148	Gaps:7	25.38	587	32.21	19.46	2e-16	mol:protein length:587 PROTEIN (GLUCOSE OXIDASE)
	3ljp_B	20	175	156	Gaps:6	28.57	546	30.13	16.03	4e-11	mol:protein length:546 Choline oxidase
	3ljp_A	20	175	156	Gaps:6	28.57	546	30.13	16.03	4e-11	mol:protein length:546 Choline oxidase
	3nne_H	20	175	156	Gaps:6	28.57	546	30.13	16.03	6e-11	mol:protein length:546 Choline oxidase
	3nne_G	20	175	156	Gaps:6	28.57	546	30.13	16.03	6e-11	mol:protein length:546 Choline oxidase
	3nne_F	20	175	156	Gaps:6	28.57	546	30.13	16.03	6e-11	mol:protein length:546 Choline oxidase
rpsblast_cdd	gnl\|CDD\|147408	31	171	141	Gaps:2	100.00	139	38.85	12.95	2e-34	pfam05199 GMC_oxred_C GMC oxidoreductase. This domain found associated with pfam00732.
	gnl\|CDD\|32458	18	179	162	Gaps:3	29.34	542	31.45	13.21	2e-25	COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].
	gnl\|CDD\|167312	31	170	140	Gaps:6	25.14	549	34.06	17.39	8e-23	PRK02106 PRK02106 choline dehydrogenase Validated.
	gnl\|CDD\|162541	33	175	143	Gaps:4	26.50	532	33.33	15.60	1e-18	TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199) sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model Caulobacter crescentus shares sequence homology with choline dehydrogenase yet other genes participating in this enzymatic reaction have not currently been identified.
	gnl\|CDD\|166426	24	152	129	Gaps:24	23.70	578	28.47	17.52	3e-07	PLN02785 PLN02785 aldehyde-lyase/mandelonitrile lyase.
rpsblast_kog	gnl\|CDD\|36452	1	178	178	Gaps:4	29.21	623	28.57	15.93	3e-28	KOG1238 KOG1238 KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	no results
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	no results
blastx_uniprot_sprot	no results
blastx_uniprot_trembl	A2QS43	152041	152577	617	44.13	29.01	n/a	Remark: Aryl-alcohol oxidase - Aspergillus niger
	Q0CIT2	152068	152574	612	39.41	27.78	n/a	Predicted protein - Aspergillus terreus (strain NIH 2624)
	A2QBK8	152068	152565	608	40.96	27.30	n/a	Contig An02c0010 complete genome - Aspergillus niger
	Q0U1A3	152095	152571	596	44.52	26.01	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q4W984	152092	152568	601	44.30	26.29	n/a	Aryl-alcohol dehydrogenase putative - Aspergillus fumigatus (Sartorya fumigata)
	A1CVB1	152092	152568	601	43.67	26.29	n/a	Aryl-alcohol dehydrogenase putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q2UJ02	152059	152565	612	39.64	27.61	n/a	Choline dehydrogenase and related flavoproteins - Aspergillus oryzae
	Q0V4T3	152014	152565	618	41.80	30.58	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A2QS43	152041	152577	617	44.13	29.01	n/a	Remark: Aryl-alcohol oxidase - Aspergillus niger
	A2R042	152008	152577	602	39.18	32.23	n/a	Contig An12c0220 complete genome - Aspergillus niger
blastx_FNG30_prot	FG03626.1	152101	152568	598	43.79	25.59	n/a	fusarium_graminearum hypothetical protein 599 aa
	SNU14291.1	152095	152571	596	44.52	26.01	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70981732:ref:XP_746395.1:	152092	152568	601	44.30	26.29	n/a	Aspergillus fumigatus Af293 aryl-alcohol dehydrogenase
	AO090003001409	152059	152565	612	39.64	27.61	n/a	Aspergillus oryzae choline dehydrogenase and related flavoproteins
	AN8329	152047	152574	631	36.93	27.89	n/a	Aspergillus nidulans AN8329.3 conserved hypothetical protein translation 632 aa
	AO090023000328	152098	152571	614	42.50	26.06	n/a	Aspergillus oryzae choline dehydrogenase and related flavoproteins
	CIMG_07947.2	152098	152577	595	42.31	26.22	n/a	Coccidioides immitis hypothetical protein translation 596 aa
	FG10986.1	152095	152571	594	36.54	26.26	n/a	fusarium_graminearum hypothetical protein 595 aa
	SNU00981.1	152014	152565	630	41.80	30.00	n/a	Stagonospora nodorum hypothetical protein translation
	AN4006	152017	152568	610	42.53	28.52	n/a	Aspergillus nidulans AN4006.3 conserved hypothetical protein translation 611 aa
sim4_B0510_genes	no results
sim4_SS_genes	no results
blastn_b0510_supercontig	B0510_supercontig_1.115	151966	152700	124743	99.86	n/a	n/a	n/a
blastn_SS_supercontig	no results
blat_oligo	botrytisP00097142	152048	152107	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:13.99 . min_over_threshold:0.68 . percent_hyb_over_threshold:82.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097143	152144	152203	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:24.53 . min_over_threshold:1.52 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00097144	152200	152259	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:13.16 . min_over_threshold:1.02 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097145	152266	152325	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:17.09 . min_over_threshold:2.71 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00097146	152292	152351	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:9.97 . min_over_threshold:0.73 . percent_hyb_over_threshold:82.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097147	152363	152422	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:3.29 . min_over_threshold:0.42 . percent_hyb_over_threshold:39.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097149	152390	152449	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:2.2 . min_over_threshold:0.33 . percent_hyb_over_threshold:32.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097150	152437	152496	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:3.87 . min_over_threshold:0.42 . percent_hyb_over_threshold:39.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00097151	152506	152565	60	n/a	n/a	n/a	array_gene:BofuT4_P079000_1 . max_over_threshold:4.38 . min_over_threshold:0.62 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog