GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P075570.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_08902	31	261	231	n/a	100.00	231	94.81	0.00	1e-122	hypothetical protein K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	ncr:NCU07944	8	259	252	n/a	95.09	265	66.67	11.51	1e-92	deoxyribose-phosphate aldolase K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	nfi:NFIA_027770	10	258	249	n/a	95.04	262	66.27	11.24	3e-90	deoxyribose-phosphate aldolase K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	afm:AFUA_7G06490	10	258	249	n/a	74.77	333	65.06	12.45	5e-89	deoxyribose-phosphate aldolase (EC:4.1.2.4) K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	aor:AO090138000062	10	259	250	n/a	95.79	261	65.20	10.40	3e-88	deoxyribose-phosphate aldolase K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	afv:AFLA_123760	10	259	250	n/a	95.79	261	65.20	10.00	1e-87	deoxyribose-phosphate aldolase K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	ote:Oter_2974	13	246	234	n/a	97.10	241	60.26	13.68	7e-78	deoxyribose-phosphate aldolase (EC:4.1.2.4) K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	ang:An02g00250	11	259	249	Gaps:11	95.97	248	63.45	11.34	8e-78	hypothetical protein K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	psl:Psta_1454	18	249	232	Gaps:8	90.91	264	53.75	13.75	7e-66	deoxyribose-phosphate aldolase (EC:4.1.2.4) K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
	msv:Mesil_2961	13	247	235	Gaps:10	86.54	260	49.78	13.33	4e-50	deoxyribose-phosphate aldolase (EC:4.1.2.4) K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
blastp_uniprot_sprot	sp\|Q7UPT7\|DEOC_RHOBA	18	253	236	Gaps:11	93.36	241	46.22	17.33	2e-49	Deoxyribose-phosphate aldolase OS Rhodopirellula baltica GN deoC PE 3 SV 2
	sp\|B0K709\|DEOC_THEPX	18	243	226	Gaps:11	97.31	223	44.70	16.13	2e-40	Deoxyribose-phosphate aldolase OS Thermoanaerobacter sp. (strain X514) GN deoC PE 3 SV 1
	sp\|B0KA53\|DEOC_THEP3	18	243	226	Gaps:11	97.31	223	44.24	16.13	5e-40	Deoxyribose-phosphate aldolase OS Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN deoC PE 3 SV 1
	sp\|Q8RB49\|DEOC_THETN	14	247	234	Gaps:11	97.40	231	42.67	16.00	8e-40	Deoxyribose-phosphate aldolase OS Thermoanaerobacter tengcongensis GN deoC PE 3 SV 1
	sp\|Q73QJ5\|DEOC_TREDE	18	238	221	Gaps:10	97.69	216	41.71	18.96	8e-39	Deoxyribose-phosphate aldolase OS Treponema denticola GN deoC PE 3 SV 1
	sp\|Q0SRC4\|DEOC_CLOPS	18	239	222	Gaps:11	94.20	224	44.55	16.11	1e-38	Deoxyribose-phosphate aldolase OS Clostridium perfringens (strain SM101 / Type A) GN deoC PE 3 SV 1
	sp\|Q0TNQ8\|DEOC_CLOP1	18	239	222	Gaps:11	94.20	224	44.55	16.11	1e-38	Deoxyribose-phosphate aldolase OS Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN deoC PE 3 SV 1
	sp\|Q8XIR2\|DEOC_CLOPE	18	239	222	Gaps:11	94.20	224	44.55	16.11	2e-38	Deoxyribose-phosphate aldolase OS Clostridium perfringens GN deoC PE 3 SV 1
	sp\|B2KBN0\|DEOC_ELUMP	19	239	221	Gaps:12	97.21	215	41.63	21.05	1e-37	Deoxyribose-phosphate aldolase OS Elusimicrobium minutum (strain Pei191) GN deoC PE 3 SV 1
	sp\|A9VQK2\|DEOC_BACWK	18	238	221	Gaps:11	94.17	223	42.86	18.10	6e-37	Deoxyribose-phosphate aldolase OS Bacillus weihenstephanensis (strain KBAB4) GN deoC PE 3 SV 1
blastp_pdb	3ngj_D	18	238	221	Gaps:12	87.45	239	43.06	18.18	5e-38	mol:protein length:239 Deoxyribose-phosphate aldolase
	3ngj_C	18	238	221	Gaps:12	87.45	239	43.06	18.18	5e-38	mol:protein length:239 Deoxyribose-phosphate aldolase
	3ngj_B	18	238	221	Gaps:12	87.45	239	43.06	18.18	5e-38	mol:protein length:239 Deoxyribose-phosphate aldolase
	3ngj_A	18	238	221	Gaps:12	87.45	239	43.06	18.18	5e-38	mol:protein length:239 Deoxyribose-phosphate aldolase
	3ng3_D	18	239	222	Gaps:17	93.83	227	39.44	16.90	5e-29	mol:protein length:227 Deoxyribose-phosphate aldolase
	3ng3_C	18	239	222	Gaps:17	93.83	227	39.44	16.90	5e-29	mol:protein length:227 Deoxyribose-phosphate aldolase
	3ng3_B	18	239	222	Gaps:17	93.83	227	39.44	16.90	5e-29	mol:protein length:227 Deoxyribose-phosphate aldolase
	3ng3_A	18	239	222	Gaps:17	93.83	227	39.44	16.90	5e-29	mol:protein length:227 Deoxyribose-phosphate aldolase
	3oa3_B	3	240	238	Gaps:19	80.90	288	33.91	24.03	5e-26	mol:protein length:288 aldolase
	3oa3_A	3	240	238	Gaps:19	80.90	288	33.91	24.03	5e-26	mol:protein length:288 aldolase
rpsblast_cdd	gnl\|CDD\|166990	18	243	226	Gaps:12	96.83	221	48.13	12.62	3e-69	PRK00507 PRK00507 deoxyribose-phosphate aldolase Provisional.
	gnl\|CDD\|29952	18	231	214	Gaps:12	99.51	203	50.50	12.38	5e-59	cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes and its broad substrate specificity confers considerable utility as a biocatalyst offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction..
	gnl\|CDD\|30622	18	240	223	Gaps:12	93.42	228	47.89	13.62	3e-54	COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism].
	gnl\|CDD\|161723	18	239	222	Gaps:12	99.53	211	45.71	17.14	4e-49	TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
	gnl\|CDD\|29940	22	231	210	Gaps:12	99.50	201	46.00	11.50	4e-39	cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases transaldolase dihydrodipicolinate synthase sub-family Type I 3-dehydroquinate dehydratase DeoC and DhnA proteins and metal-independent fructose-1 6-bisphosphate aldolase. Although structurally similar the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin..
	gnl\|CDD\|145121	17	240	224	Gaps:35	100.00	231	36.36	14.72	2e-28	pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4 which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1 6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
	gnl\|CDD\|167957	49	217	169	Gaps:22	64.98	257	34.73	13.77	1e-12	PRK05283 PRK05283 deoxyribose-phosphate aldolase Provisional.
rpsblast_kog	gnl\|CDD\|39184	49	224	176	Gaps:23	53.68	326	34.86	12.00	4e-15	KOG3981 KOG3981 KOG3981 Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCMA_568202	183383	183866	484	98.14	100.00	n/a	Botrytis cinerea HortResearch libraries
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q7UPT7	183102	183809	241	48.89	93.36	n/a	Deoxyribose-phosphate aldolase - Rhodopirellula baltica
	Q8RB49	183120	183821	231	44.89	97.40	n/a	Deoxyribose-phosphate aldolase - Thermoanaerobacter tengcongensis
	Q73QJ5	183147	183809	216	45.50	97.69	n/a	Deoxyribose-phosphate aldolase - Treponema denticola
	Q0SRC4	183144	183809	224	46.45	94.20	n/a	Deoxyribose-phosphate aldolase - Clostridium perfringens (strain SM101 / Type A)
	Q0TNQ8	183144	183809	224	46.45	94.20	n/a	Deoxyribose-phosphate aldolase - Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
	Q8XIR2	183144	183809	224	46.45	94.20	n/a	Deoxyribose-phosphate aldolase - Clostridium perfringens
	A8FJ14	183144	183809	223	45.50	94.62	n/a	Deoxyribose-phosphate aldolase - Bacillus pumilus (strain SAFR-032)
	Q6HK62	183147	183809	223	44.76	94.17	n/a	Deoxyribose-phosphate aldolase - Bacillus thuringiensis subsp. konkukian
	Q63CR9	183147	183809	223	44.76	94.17	n/a	Deoxyribose-phosphate aldolase - Bacillus cereus (strain ZK / E33L)
	Q73A11	183147	183809	223	44.76	94.17	n/a	Deoxyribose-phosphate aldolase - Bacillus cereus (strain ATCC 10987)
blastx_uniprot_trembl	Q0CJ29	183084	183833	261	71.20	95.79	n/a	Deoxyribose-phosphate aldolase - Aspergillus terreus (strain NIH 2624)
	Q7S9X4	183084	183839	265	70.24	95.09	n/a	Deoxyribose-phosphate aldolase - Neurospora crassa
	A1DCZ3	183087	183833	262	69.08	95.04	n/a	Deoxyribose-phosphate aldolase - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WGW8	183087	183833	333	67.87	74.77	n/a	Deoxyribose-phosphate aldolase - Aspergillus fumigatus (Sartorya fumigata)
	Q2U1X1	183084	183833	261	68.80	95.79	n/a	Deoxyribose-phosphate aldolase - Aspergillus oryzae
	A2QBJ3	183084	183830	248	67.23	95.97	n/a	Contig An02c0010 complete genome - Aspergillus niger
	A6C525	183129	183809	232	48.85	93.53	n/a	Deoxyribose-phosphate aldolase - Planctomyces maris DSM 8797
	A7NMT7	183129	183809	248	50.93	87.10	n/a	Deoxyribose-phosphate aldolase - Roseiflexus castenholzii DSM 13941
	A5US88	183129	183809	248	50.93	87.10	n/a	Deoxyribose-phosphate aldolase - Roseiflexus sp. (strain RS-1)
blastx_FNG30_prot	NCU07944.2	183084	183839	265	70.24	95.09	n/a	Neurospora crassa hypothetical protein translation 266 aa
	gi:70986744:ref:XP_748861.1:	183087	183833	333	67.87	74.77	n/a	Aspergillus fumigatus Af293 deoxyribose-phosphate aldolase
	AO090138000062	183084	183833	261	68.80	95.79	n/a	Aspergillus oryzae deoxyribose-phosphate aldolase
	RO3G_13041.1	183129	183809	236	43.38	92.80	n/a	rhizopus_oryzae hypothetical protein translation 237 aa
	CIMG_00461.2	183099	183809	267	36.52	86.14	n/a	Coccidioides immitis hypothetical protein translation 268 aa
	AO090020000341	183114	183803	719	35.43	31.02	n/a	Aspergillus oryzae uncharacterized conserved protein
	AN4772	183114	183803	544	35.43	40.99	n/a	Aspergillus nidulans AN4772.3 conserved hypothetical protein translation 545 aa
	gi:71000527:ref:XP_754947.1:	183141	183803	364	35.98	58.79	n/a	Aspergillus fumigatus Af293 deoxyribose-phosphate aldolase
	UM01198.1	183141	183902	281	34.92	89.68	n/a	ustilago_maydis hypothetical protein 282 aa
sim4_B0510_genes	BC1G_08902.1	183075	183770	696	100.00	100.00	n/a	n/a
sim4_B0510_genes	BC1G_08902.1	183075	183770	696	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_11450.1	182140	183230	1215	85.22	50.12	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.50	182083	189220	253584	99.99	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.18	183127	183653	983747	78.37	n/a	n/a	n/a
blat_oligo	botrytisP00094372	183666	183725	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:22.51 . min_over_threshold:2.88 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094373	183626	183685	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:36.54 . min_over_threshold:4.61 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094374	183598	183657	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:39.05 . min_over_threshold:5.47 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094375	183568	183627	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:30.91 . min_over_threshold:4.4 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094376	183334	183393	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:33.45 . min_over_threshold:2.46 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094377	183269	183328	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:27.12 . min_over_threshold:2.37 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094378	183177	183236	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:34.15 . min_over_threshold:2.56 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094380	183159	183218	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:21.33 . min_over_threshold:1.48 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00094381	183146	183205	60	n/a	n/a	n/a	array_gene:BofuT4_P075570_1 . max_over_threshold:24.09 . min_over_threshold:1.77 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog