GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P074120.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_05334	1	173	173	n/a	78.64	220	98.27	1.16	8e-96	hypothetical protein
	afv:AFLA_113330	2	173	172	n/a	51.65	333	63.95	15.12	2e-60	short-chain dehydrogenase/reductase putative
	aor:AO090023000924	2	173	172	n/a	51.65	333	63.95	15.12	2e-60	dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	ang:An03g02180	2	176	175	n/a	52.87	331	62.86	14.86	1e-59	hypothetical protein
	afv:AFLA_120230	4	172	169	n/a	51.52	328	57.40	16.57	3e-50	short-chain dehydrogenase putative
	aor:AO090010000538	4	172	169	n/a	51.52	328	56.80	16.57	8e-50	dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	ang:An07g00400	2	171	170	n/a	51.52	330	56.47	16.47	6e-48	hypothetical protein
	pcs:Pc12g06300	2	170	169	n/a	49.71	340	50.30	14.79	4e-43	Pc12g06300
	nfi:NFIA_003190	2	173	172	n/a	52.12	330	54.65	15.12	3e-42	short-chain dehydrogenase
	afm:AFUA_3G02100	2	173	172	n/a	25.26	681	54.65	15.70	9e-42	short-chain dehydrogenase/reductase (EC:1.-.-.-) K00540 [EC:1.-.-.-]
blastp_uniprot_sprot	sp\|Q8TC12\|RDH11_HUMAN	10	168	159	Gaps:4	48.74	318	38.71	15.48	2e-17	Retinol dehydrogenase 11 OS Homo sapiens GN RDH11 PE 1 SV 2
	sp\|Q96NR8\|RDH12_HUMAN	19	168	150	Gaps:4	46.20	316	38.36	17.12	2e-16	Retinol dehydrogenase 12 OS Homo sapiens GN RDH12 PE 1 SV 3
	sp\|Q8CEE7\|RDH13_MOUSE	11	176	166	Gaps:5	48.80	334	33.74	22.09	6e-16	Retinol dehydrogenase 13 OS Mus musculus GN Rdh13 PE 2 SV 1
	sp\|Q8NBN7\|RDH13_HUMAN	19	168	150	Gaps:5	44.41	331	37.41	19.05	2e-15	Retinol dehydrogenase 13 OS Homo sapiens GN RDH13 PE 1 SV 2
	sp\|Q9HBH5\|RDH14_HUMAN	19	167	149	Gaps:4	43.15	336	36.55	19.31	2e-15	Retinol dehydrogenase 14 OS Homo sapiens GN RDH14 PE 1 SV 1
	sp\|Q9ERI6\|RDH14_MOUSE	19	167	149	Gaps:4	43.41	334	36.55	19.31	4e-15	Retinol dehydrogenase 14 OS Mus musculus GN Rdh14 PE 1 SV 1
	sp\|Q9QYF1\|RDH11_MOUSE	19	168	150	Gaps:4	46.20	316	36.99	15.75	6e-15	Retinol dehydrogenase 11 OS Mus musculus GN Rdh11 PE 2 SV 2
	sp\|P59837\|RDH12_BOVIN	19	166	148	Gaps:4	45.57	316	36.11	19.44	2e-14	Retinol dehydrogenase 12 OS Bos taurus GN RDH12 PE 2 SV 1
	sp\|P35320\|OXIR_STRLI	11	176	166	Gaps:14	53.87	297	35.62	18.75	2e-14	Probable oxidoreductase OS Streptomyces lividans PE 3 SV 1
	sp\|Q8N5I4\|DHRSX_HUMAN	11	167	157	Gaps:2	48.18	330	31.45	23.27	6e-14	Dehydrogenase/reductase SDR family member on chromosome X OS Homo sapiens GN DHRSX PE 2 SV 2
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|168456	19	176	158	Gaps:4	49.04	314	38.96	17.53	2e-33	PRK06196 PRK06196 oxidoreductase Provisional.
	gnl\|CDD\|168457	16	169	154	Gaps:7	50.00	306	37.25	13.73	2e-25	PRK06197 PRK06197 short chain dehydrogenase Provisional.
	gnl\|CDD\|168273	13	164	152	Gaps:16	47.92	313	38.67	17.33	4e-21	PRK05854 PRK05854 short chain dehydrogenase Provisional.
	gnl\|CDD\|168956	2	166	165	Gaps:40	59.32	322	26.18	14.66	4e-12	PRK07453 PRK07453 protochlorophyllide oxidoreductase Validated.
	gnl\|CDD\|31231	12	175	164	Gaps:23	59.36	251	22.15	20.13	3e-10	COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis transport and catabolism / General function prediction only].
rpsblast_kog	gnl\|CDD\|36422	12	169	158	Gaps:8	49.04	314	38.96	14.94	8e-25	KOG1208 KOG1208 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis transport and catabolism].
rpsblast_kog	gnl\|CDD\|36824	5	163	159	Gaps:10	64.66	249	28.57	16.77	7e-10	KOG1611 KOG1611 KOG1611 Predicted short chain-type dehydrogenase [General function prediction only].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	no results
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q8VBZ0	310279	310909	335	39.18	57.91	n/a	Dehydrogenase/reductase SDR family member on chromosome X homolog precursor - Mus musculus (Mouse)
	Q8CEE7	310174	310903	334	34.55	65.87	n/a	Retinol dehydrogenase 13 - Mus musculus (Mouse)
	Q8TC12	310285	311057	318	38.60	71.70	n/a	Retinol dehydrogenase 11 - Homo sapiens (Human)
	Q9QYF1	310285	311057	316	35.34	73.42	n/a	Retinol dehydrogenase 11 - Mus musculus (Mouse)
	Q8N5I4	310297	310969	330	35.38	64.24	n/a	Dehydrogenase/reductase SDR family member on chromosome X precursor - Homo sapiens (Human)
	P59837	310291	311057	316	35.68	76.27	n/a	Retinol dehydrogenase 12 - Bos taurus (Bovine)
	Q8BYK4	310291	311057	316	35.68	76.27	n/a	Retinol dehydrogenase 12 - Mus musculus (Mouse)
	Q96NR8	310291	310987	316	34.55	69.62	n/a	Retinol dehydrogenase 12 - Homo sapiens (Human)
blastx_uniprot_trembl	Q2UG97	310168	311165	333	61.03	99.40	n/a	Dehydrogenases with different specificities - Aspergillus oryzae
	A2QG78	310168	311153	331	63.11	99.09	n/a	Remark: about the patent is no further information available. - Aspergillus niger
	A2QM10	310168	311153	330	57.80	99.09	n/a	Similarity: belongs to the short-chain alcohol dehydrogenase family - Aspergillus niger
	A1DJS6	310168	311147	330	54.60	98.79	n/a	Short-chain dehydrogenase - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WFI5	310168	311153	681	53.05	48.16	n/a	Short-chain dehydrogenase/reductase putative - Aspergillus fumigatus (Sartorya fumigata)
	Q2TWI9	310174	311111	328	55.13	95.12	n/a	Dehydrogenases with different specificities - Aspergillus oryzae
	Q0UMI8	310201	311153	336	50.80	93.15	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q2UJ34	310165	311153	334	45.77	95.51	n/a	Dehydrogenases with different specificities - Aspergillus oryzae
blastx_FNG30_prot	AO090023000924	310168	311165	333	61.03	99.40	n/a	Aspergillus oryzae dehydrogenases with different specificities related to short-chain alcohol dehydrogenases
	gi:70986060:ref:XP_748530.1:	310168	311153	681	53.05	48.16	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu3g02100
	AO090010000538	310174	311111	328	55.13	95.12	n/a	Aspergillus oryzae dehydrogenases with different specificities related to short-chain alcohol dehydrogenases
	FG03206.1	310210	311150	794	51.44	39.42	n/a	fusarium_graminearum hypothetical protein 795 aa
	SNU07026.1	310201	311153	336	50.80	93.15	n/a	Stagonospora nodorum hypothetical protein translation
	jgi:Triree:41165	310186	311153	340	50.00	87.65	n/a	Trichoderma reesei
	AO090003001373	310165	311153	334	45.77	95.51	n/a	Aspergillus oryzae dehydrogenases with different specificities related to short-chain alcohol dehydrogenases
	SS1G_02819.1	310165	311153	336	46.97	98.21	n/a	sclerotinia_sclerotiorum hypothetical protein translation 337 aa
	gi:70992399:ref:XP_751048.1:	310171	311153	338	46.20	93.49	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu6g11650
	CIMG_10118.2	310168	311153	331	43.47	99.40	n/a	Coccidioides immitis hypothetical protein translation 332 aa
sim4_B0510_genes	no results
sim4_SS_genes	no results
blastn_b0510_supercontig	B0510_supercontig_1.25	309912	311926	386430	99.75	n/a	n/a	n/a
blastn_SS_supercontig	no results
blat_oligo	botrytisP00093272	310880	310939	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.53 . min_over_threshold:0.21 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093273	310825	310884	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.63 . min_over_threshold:0.21 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093274	310756	310815	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.6 . min_over_threshold:0.23 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093276	310745	310804	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.57 . min_over_threshold:0.2 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093277	310572	310631	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.65 . min_over_threshold:0.25 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093278	310549	310608	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.59 . min_over_threshold:0.27 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093279	310486	310545	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.64 . min_over_threshold:0.36 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093280	310481	310540	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.68 . min_over_threshold:0.34 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00093281	310431	310490	60	n/a	n/a	n/a	array_gene:BofuT4_P074120_1 . max_over_threshold:0.57 . min_over_threshold:0.23 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog