GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P073190.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_05423	1	536	536	n/a	100.00	536	96.46	0.19	0.0	hypothetical protein
	ssl:SS1G_11233	1	536	536	Gaps:11	100.00	527	88.61	4.17	0.0	hypothetical protein
	act:ACLA_048400	1	533	533	Gaps:8	98.51	537	65.60	13.99	0.0	high affinity methionine permease
	nfi:NFIA_107130	20	533	514	Gaps:6	94.60	537	67.91	13.19	0.0	high affinity methionine permease
	afm:AFUA_4G09040	20	533	514	Gaps:6	94.60	537	67.52	13.39	0.0	high affinity methionine permease
	ang:An04g03940	19	533	515	Gaps:6	92.71	549	66.80	14.54	0.0	hypothetical protein
	pan:PODANSg3870	43	532	490	Gaps:9	98.00	499	69.73	12.47	0.0	hypothetical protein
	afv:AFLA_110610	1	533	533	Gaps:7	96.53	547	64.20	13.83	0.0	high affinity methionine permease
	ani:AN1631.2	16	511	496	Gaps:6	93.51	524	68.78	12.65	0.0	hypothetical protein
	pcs:Pc18g03480	37	533	497	Gaps:3	91.48	540	66.60	14.98	0.0	Pc18g03480
blastp_uniprot_sprot	sp\|P50276\|MUP1_YEAST	7	534	528	Gaps:12	91.29	574	49.81	19.08	1e-147	High-affinity methionine permease OS Saccharomyces cerevisiae GN MUP1 PE 1 SV 1
	sp\|P38734\|MUP3_YEAST	17	524	508	Gaps:29	93.22	546	30.84	22.00	7e-56	Low-affinity methionine permease OS Saccharomyces cerevisiae GN MUP3 PE 1 SV 1
	sp\|Q9QXA6\|BAT1_MOUSE	24	508	485	Gaps:58	95.48	487	28.60	20.00	9e-30	B(0 +)-type amino acid transporter 1 OS Mus musculus GN Slc7a9 PE 2 SV 1
	sp\|Q9N1R6\|BAT1_RABIT	35	504	470	Gaps:61	93.43	487	28.79	18.68	1e-29	B(0 +)-type amino acid transporter 1 OS Oryctolagus cuniculus GN SLC7A9 PE 1 SV 1
	sp\|Q9WTR6\|XCT_MOUSE	48	463	416	Gaps:22	79.68	502	28.00	21.75	4e-29	Cystine/glutamate transporter OS Mus musculus GN Slc7a11 PE 1 SV 1
	sp\|P82251\|BAT1_HUMAN	34	504	471	Gaps:67	93.63	487	27.85	19.74	1e-28	B(0 +)-type amino acid transporter 1 OS Homo sapiens GN SLC7A9 PE 1 SV 1
	sp\|P82252\|BAT1_RAT	29	508	480	Gaps:58	95.28	487	28.88	18.32	3e-28	B(0 +)-type amino acid transporter 1 OS Rattus norvegicus GN Slc7a9 PE 1 SV 1
	sp\|Q92536\|YLAT2_HUMAN	39	363	325	Gaps:10	62.33	515	27.73	20.25	6e-28	Y+L amino acid transporter 2 OS Homo sapiens GN SLC7A6 PE 1 SV 3
	sp\|Q8BGK6\|YLAT2_MOUSE	23	363	341	Gaps:10	65.44	515	26.71	20.18	1e-27	Y+L amino acid transporter 2 OS Mus musculus GN Slc7a6 PE 2 SV 1
	sp\|Q9Z1K8\|YLAT1_MOUSE	48	466	419	Gaps:22	79.02	510	27.30	20.10	2e-27	Y+L amino acid transporter 1 OS Mus musculus GN Slc7a7 PE 1 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|162101	30	524	495	Gaps:48	95.21	501	33.75	16.98	1e-106	TIGR00911 2A0308 L-type amino acid transporter.
	gnl\|CDD\|30877	39	467	429	Gaps:18	91.63	466	21.78	22.25	3e-26	COG0531 PotE Amino acid transporters [Amino acid transport and metabolism].
	gnl\|CDD\|129987	48	428	381	Gaps:54	84.62	429	23.97	15.15	2e-15	TIGR00909 2A0306 amino acid transporter.
	gnl\|CDD\|144058	64	481	418	Gaps:30	89.22	473	20.14	18.01	1e-13	pfam00324 AA_permease Amino acid permease.
	gnl\|CDD\|162100	67	469	403	Gaps:41	86.72	482	23.68	14.35	3e-12	TIGR00907 2A0304 amino acid permease (GABA permease).
	gnl\|CDD\|105192	43	377	335	Gaps:38	73.93	445	24.01	18.84	8e-12	PRK11357 frlA putative fructoselysine transporter Provisional.
	gnl\|CDD\|31310	65	511	447	Gaps:35	93.07	462	20.70	19.77	2e-11	COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].
	gnl\|CDD\|170439	49	339	291	Gaps:32	63.84	437	24.73	19.71	4e-09	PRK10435 cadB lysine/cadaverine antiporter Provisional.
	gnl\|CDD\|129983	49	428	380	Gaps:40	79.49	473	22.07	18.09	2e-08	TIGR00905 2A0302 transporter basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that rather commonly are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
	gnl\|CDD\|31175	6	502	497	Gaps:54	92.98	541	17.30	19.88	6e-07	COG0833 LysP Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog	gnl\|CDD\|36501	38	520	483	Gaps:30	95.41	479	29.32	20.79	4e-76	KOG1287 KOG1287 KOG1287 Amino acid transporters [Amino acid transport and metabolism].
	gnl\|CDD\|36503	74	503	430	Gaps:32	80.00	550	19.77	16.59	4e-22	KOG1289 KOG1289 KOG1289 Amino acid transporters [Amino acid transport and metabolism].
	gnl\|CDD\|36500	48	509	462	Gaps:37	86.46	554	16.91	16.91	7e-20	KOG1286 KOG1286 KOG1286 Amino acid transporters [Amino acid transport and metabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ACA6YD05FM1	93548	94360	745	100.00	100.00	n/a	BT4 mycelium - pH stress library
sim4_Bot_allest4_clctg	PD0ACA6YD05FM1	93548	94360	745	100.00	100.00	n/a	BT4 mycelium - pH stress library
sim4_Ss_allest	no results
blastx_uniprot_sprot	P50276	92368	94051	574	53.25	85.71	n/a	High-affinity methionine permease - Saccharomyces cerevisiae (Baker's yeast)
	P38734	93494	94003	546	41.18	31.14	n/a	Low-affinity methionine permease - Saccharomyces cerevisiae (Baker's yeast)
	Q5RAG7	92993	94006	501	30.61	58.68	n/a	Cystine/glutamate transporter - Pongo pygmaeus (Orangutan)
	Q9UPY5	92993	94006	501	30.61	58.68	n/a	Cystine/glutamate transporter - Homo sapiens (Human)
	Q9QXA6	93207	94021	487	32.41	51.95	n/a	B(0 +)-type amino acid transporter 1 - Mus musculus (Mouse)
	Q01650	92993	94057	507	31.51	61.34	n/a	Large neutral amino acids transporter small subunit 1 - Homo sapiens (Human)
	P82252	93207	94021	487	32.79	50.72	n/a	B(0 +)-type amino acid transporter 1 - Rattus norvegicus (Rat)
	Q63016	92993	94006	512	30.00	58.59	n/a	Large neutral amino acids transporter small subunit 1 - Rattus norvegicus (Rat)
	Q9Z127	92993	94006	512	29.67	58.59	n/a	Large neutral amino acids transporter small subunit 1 - Mus musculus (Mouse)
	Q9N1R6	93207	94021	487	31.60	51.33	n/a	B(0 +)-type amino acid transporter 1 - Oryctolagus cuniculus (Rabbit)
blastx_uniprot_trembl	Q6C0C9	92338	94036	574	64.41	87.63	n/a	Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica - Yarrowia lipolytica (Candida lipolytica)
	A8NVG8	92350	94042	537	60.66	90.88	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7#130
	Q6FXH6	92335	94057	592	53.69	84.63	n/a	Similar to sp\|P50276 Saccharomyces cerevisiae YGR055w MUP1 - Candida glabrata (Yeast) (Torulopsis glabrata)
	A6ZV40	92368	94051	574	53.25	85.71	n/a	Methionine permease - Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)
	Q2KEX9	92344	94060	540	47.90	92.78	n/a	Putative uncharacterized protein - Magnaporthe grisea 70-15
	A4RAT5	92344	94060	540	47.90	92.78	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	A8PVI9	92344	94003	555	48.45	87.39	n/a	Putative uncharacterized protein - Malassezia globosa CBS 7966
	A7TQA1	92212	94054	586	51.49	91.81	n/a	Putative uncharacterized protein - Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (Kluyveromyces polysporus)
blastx_FNG30_prot	gi:50556950:ref:XP_505883.1	92338	94036	574	64.41	87.63	n/a	Yarrowia lipolytica hypothetical protein
	SS1G_11233.1	92341	94215	527	92.19	99.62	n/a	sclerotinia_sclerotiorum hypothetical protein translation 528 aa
	gi:50285333:ref:XP_445095.1:	92335	94057	592	53.69	84.63	n/a	unnamed protein product [Candida glabrata]
	ORFP:8213	92368	94051	574	53.25	85.71	n/a	Saccharomyces paradoxus YGR055W Contig c7 16514-18238 reverse complement
	gi:6321492:ref:NP_011569.1	92368	94051	574	53.25	85.71	n/a	Saccharomyces cerevisiae High affinity methionine permease integral membrane protein with 13 putative membrane-spanning regions also involved in cysteine uptake Mup1p
	ORFP:Skud_Contig2031.6	92368	94051	574	52.64	85.71	n/a	Saccharomyces kudiavzevi YGR055W Contig c2031 10397-12121 reverse complement
	MGG_03103.5	92344	94060	540	47.90	92.78	n/a	magnaporthe_grisea hypothetical protein translation 541 aa
	NCU04942.2	92341	94003	530	49.05	89.62	n/a	Neurospora crassa hypothetical protein translation 531 aa
	SNU09778.1	92371	94054	534	46.75	89.33	n/a	Stagonospora nodorum hypothetical protein translation
	NCU07754.2	92320	94066	567	46.89	88.01	n/a	Neurospora crassa hypothetical protein translation 568 aa
sim4_B0510_genes	BC1G_05423.1	92332	94215	1611	99.94	100.00	n/a	n/a
sim4_SS_genes	SS1G_11233.1	92341	94024	1584	86.00	89.71	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.25	92057	98639	386430	99.20	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.17	93421	94008	1000361	85.37	n/a	n/a	n/a
	SS_supercontig_1.17	92986	93165	1000361	88.89	n/a	n/a	n/a
	SS_supercontig_1.17	92772	92943	1000361	86.63	n/a	n/a	n/a
	SS_supercontig_1.17	93220	93371	1000361	84.21	n/a	n/a	n/a
	SS_supercontig_1.17	92323	92741	1000361	84.01	n/a	n/a	n/a
blat_oligo	botrytisP00092572	93860	93919	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:21.31 . min_over_threshold:1.62 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092573	93699	93758	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:29.56 . min_over_threshold:2.56 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092574	93349	93458	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:21.78 . min_over_threshold:1.9 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092575	93344	93453	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:21.26 . min_over_threshold:2.18 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092576	93339	93448	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:24.45 . min_over_threshold:1.39 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092577	93334	93443	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:29.04 . min_over_threshold:1.97 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092578	93219	93278	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:8.66 . min_over_threshold:1 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092580	92673	92784	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:11.98 . min_over_threshold:0.91 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00092581	92597	92656	60	n/a	n/a	n/a	array_gene:BofuT4_P073190_1 . max_over_threshold:28.47 . min_over_threshold:2.32 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1

Current manual annotation

Ortholog