GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P058390.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_08522	1	377	377	Gaps:20	100.00	357	92.44	0.00	0.0	hypothetical protein K10872 meiotic recombination protein DMC1
	ssl:SS1G_00994	1	377	377	Gaps:52	100.00	325	88.31	4.00	1e-159	hypothetical protein K10872 meiotic recombination protein DMC1
	cim:CIMG_07759	46	377	332	Gaps:21	92.33	339	69.97	9.90	1e-119	hypothetical protein K10872 meiotic recombination protein DMC1
	ani:AN9092.2	46	376	331	Gaps:20	47.26	658	68.17	11.25	1e-116	hypothetical protein K10872 meiotic recombination protein DMC1
	act:ACLA_065330	46	376	331	Gaps:20	92.28	337	68.49	10.93	1e-116	meiotic recombination protein dmc1 K10872 meiotic recombination protein DMC1
	pcs:Pc21g11930	27	377	351	Gaps:21	94.02	351	65.15	11.82	1e-115	Pc21g11930 K10872 meiotic recombination protein DMC1
	afv:AFLA_071370	46	376	331	Gaps:20	97.80	318	67.20	12.22	1e-115	meiotic recombination protein (Dmc1) putative K10872 meiotic recombination protein DMC1
	afm:AFUA_7G02200	52	376	325	Gaps:20	90.24	338	67.54	11.48	1e-112	meiotic recombination protein (Dmc1) K10872 meiotic recombination protein DMC1
	ang:An12g00460	72	377	306	Gaps:20	85.63	334	70.28	10.84	1e-110	hypothetical protein K10872 meiotic recombination protein DMC1
	nfi:NFIA_114920	37	355	319	Gaps:22	83.19	357	66.33	12.79	1e-104	meiotic recombination protein dmc1 K10872 meiotic recombination protein DMC1
blastp_uniprot_sprot	sp\|P25453\|DMC1_YEAST	29	373	345	Gaps:22	96.71	334	56.66	15.48	3e-98	Meiotic recombination protein DMC1 OS Saccharomyces cerevisiae GN DMC1 PE 1 SV 1
	sp\|P50265\|DLH1_CANAL	36	375	340	Gaps:22	98.15	324	58.18	12.89	2e-97	Meiotic recombination protein DLH1 OS Candida albicans GN DLH1 PE 3 SV 1
	sp\|O42634\|DMC1_SCHPO	26	373	348	Gaps:24	98.19	332	57.06	13.19	5e-96	Meiotic recombination protein dmc1 OS Schizosaccharomyces pombe GN dmc1 PE 1 SV 2
	sp\|Q14565\|DMC1_HUMAN	34	376	343	Gaps:30	93.24	340	51.74	17.03	7e-81	Meiotic recombination protein DMC1/LIM15 homolog OS Homo sapiens GN DMC1 PE 1 SV 2
	sp\|Q61880\|DMC1_MOUSE	34	376	343	Gaps:30	93.24	340	51.10	17.98	2e-80	Meiotic recombination protein DMC1/LIM15 homolog OS Mus musculus GN Dmc1 PE 1 SV 1
	sp\|Q96449\|DMC1_SOYBN	42	373	332	Gaps:24	89.28	345	51.30	15.26	2e-79	Meiotic recombination protein DMC1 homolog OS Glycine max PE 2 SV 1
	sp\|P37384\|DMC1_LILLO	42	373	332	Gaps:24	88.25	349	50.65	16.23	1e-78	Meiotic recombination protein DMC1 homolog OS Lilium longiflorum GN LIM15 PE 2 SV 1
	sp\|Q39009\|DMC1_ARATH	42	375	334	Gaps:24	90.12	344	49.68	16.45	1e-76	Meiotic recombination protein DMC1 homolog OS Arabidopsis thaliana GN LIM15 PE 1 SV 2
	sp\|P94102\|RAD51_ARATH	45	373	329	Gaps:23	89.47	342	50.33	16.01	4e-74	DNA repair protein RAD51 homolog 1 OS Arabidopsis thaliana GN RAD51 PE 1 SV 1
	sp\|Q91918\|RA51A_XENLA	27	373	347	Gaps:29	94.64	336	50.00	13.84	3e-73	DNA repair protein RAD51 homolog A OS Xenopus laevis GN rad51-a PE 2 SV 1
blastp_pdb	1v5w_B	34	376	343	Gaps:30	92.42	343	51.74	17.03	1e-81	mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
	1v5w_A	34	376	343	Gaps:30	92.42	343	51.74	17.03	1e-81	mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
	2zjb_B	34	376	343	Gaps:30	92.42	343	51.74	17.03	2e-81	mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
	2zjb_A	34	376	343	Gaps:30	92.42	343	51.74	17.03	2e-81	mol:protein length:343 Meiotic recombination protein DMC1/LIM15 homo
	1szp_F	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
	1szp_E	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
	1szp_D	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
	1szp_C	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
	1szp_B	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
	1szp_A	36	376	341	Gaps:33	99.07	321	46.86	18.55	8e-68	mol:protein length:321 DNA repair protein RAD51
rpsblast_cdd	gnl\|CDD\|131292	42	373	332	Gaps:23	98.72	313	63.43	13.92	1e-123	TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1 a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
	gnl\|CDD\|117002	104	375	272	Gaps:19	96.93	261	60.08	13.44	1e-115	pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
	gnl\|CDD\|162778	39	375	337	Gaps:26	99.68	316	53.65	17.78	1e-102	TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51 a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238) to archaeal families RadA (TIGR02236) and RadB (TIGR02237) and to bacterial RecA (TIGR02012).
	gnl\|CDD\|167782	29	374	346	Gaps:33	100.00	317	48.26	15.46	2e-86	PRK04301 radA DNA repair and recombination protein RadA Validated.
	gnl\|CDD\|173332	3	375	373	Gaps:26	99.14	350	46.97	15.85	9e-86	PTZ00035 PTZ00035 Rad51 Provisional.
	gnl\|CDD\|29989	120	371	252	Gaps:20	99.57	235	57.69	16.67	2e-80	cd01123 Rad51_DMC1_radA Rad51_DMC1_radA B. This group of recombinases includes the eukaryotic proteins RAD51 RAD55/57 and the meiosis-specific protein DMC1 and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However this reaction is less efficient and requires accessory proteins such as RAD55/57 ..
	gnl\|CDD\|131290	46	373	328	Gaps:23	98.39	310	47.21	17.70	3e-76	TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein a homolog of bacterial RecA (TIGR02012) eukaryotic RAD51 (TIGR02239) and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
	gnl\|CDD\|30003	120	364	245	Gaps:25	100.00	226	53.54	15.49	7e-71	cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination DNA repair and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein eukaryotes have multiple RecA homologs such as Rad51 DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB..
	gnl\|CDD\|30816	76	376	301	Gaps:46	96.42	279	33.46	14.50	6e-54	COG0468 RecA RecA/RadA recombinase [DNA replication recombination and repair].
	gnl\|CDD\|169816	119	373	255	Gaps:46	97.77	224	39.27	13.70	1e-30	PRK09361 radB DNA repair and recombination protein RadB Provisional.
rpsblast_kog	gnl\|CDD\|36647	32	373	342	Gaps:29	94.03	335	57.46	14.92	1e-96	KOG1434 KOG1434 KOG1434 Meiotic recombination protein Dmc1 [Energy production and conversion Replication recombination and repair].
	gnl\|CDD\|36646	31	374	344	Gaps:37	94.17	326	43.65	16.29	3e-54	KOG1433 KOG1433 KOG1433 DNA repair protein RAD51/RHP55 [Replication recombination and repair].
	gnl\|CDD\|36777	119	371	253	Gaps:29	75.78	351	30.08	14.66	1e-26	KOG1564 KOG1564 KOG1564 DNA repair protein RHP57 [Replication recombination and repair].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ABA7YG23FM1	322923	323604	682	100.00	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_51_1_bt4ctg_0755_006.Contig1_v5	322605	323604	1000	99.80	100.00	n/a	all_lib_clone_nr:1
sim4_Ss_allest	G786P567RH4.T0	315890	329790	719	86.16	53.27	n/a	Ss ESTs grown as mycelia at neutral pH
blastx_uniprot_sprot	P25453	323907	325152	334	62.77	84.43	n/a	Meiotic recombination protein DMC1 - Saccharomyces cerevisiae (Baker's yeast)
	O42634	323725	325152	332	61.34	94.28	n/a	Meiotic recombination protein dmc1 - Schizosaccharomyces pombe (Fission yeast)
	P50265	324074	325158	324	64.82	78.09	n/a	Meiotic recombination protein DLH1 - Candida albicans (Yeast)
	Q96449	324313	325152	345	59.80	59.13	n/a	Meiotic recombination protein DMC1 homolog - Glycine max (Soybean)
	P37384	324313	325152	349	58.82	58.45	n/a	Meiotic recombination protein DMC1 homolog - Lilium longiflorum (Trumpet lily)
	Q39009	324313	325047	344	60.22	54.07	n/a	Meiotic recombination protein DMC1 homolog - Arabidopsis thaliana (Mouse-ear cress)
	Q14565	324313	325161	340	58.10	61.76	n/a	Meiotic recombination protein DMC1/LIM15 homolog - Homo sapiens (Human)
	Q61880	324313	325161	340	57.62	61.76	n/a	Meiotic recombination protein DMC1/LIM15 homolog - Mus musculus (Mouse)
	Q91917	324313	325047	336	57.75	55.65	n/a	DNA repair protein RAD51 homolog B - Xenopus laevis (African clawed frog)
	Q91918	324313	325047	336	57.75	55.65	n/a	DNA repair protein RAD51 homolog A - Xenopus laevis (African clawed frog)
blastx_uniprot_trembl	Q1DPK4	323928	325164	339	76.57	84.37	n/a	Putative uncharacterized protein - Coccidioides immitis
	A6R456	323928	325161	358	69.84	85.20	n/a	Meiotic recombination protein dmc1 - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	A2QY95	323674	325164	334	70.06	97.01	n/a	Contig An12c0020 complete genome - Aspergillus niger
	A1CG19	323928	325161	337	73.94	84.27	n/a	Meiotic recombination protein dmc1 - Aspergillus clavatus
	Q4WAR2	323928	325161	338	72.54	84.02	n/a	Meiotic recombination protein - Aspergillus fumigatus (Sartorya fumigata)
	Q5ARI8	323928	326528	658	58.05	88.75	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
blastx_FNG30_prot	SS1G_00994.1	323782	325164	325	92.36	96.62	n/a	sclerotinia_sclerotiorum hypothetical protein translation 326 aa
	CIMG_07759.2	323928	325164	339	76.57	84.37	n/a	Coccidioides immitis hypothetical protein translation 340 aa
	SNU11614.1	323695	325161	338	70.98	93.79	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70982368:ref:XP_746712.1:	323928	325161	338	72.54	84.02	n/a	Aspergillus fumigatus Af293 meiotic recombination protein
	AN9092	323928	326528	658	58.05	88.75	n/a	Aspergillus nidulans AN9092.3 conserved hypothetical protein translation 659 aa
sim4_B0510_genes	BC1G_08522.1	323597	325167	1074	99.91	100.00	n/a	n/a
sim4_SS_genes	SS1G_00994.1	323597	325167	978	89.37	89.47	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.49	323570	326230	256765	99.92	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.1	324623	324837	2777073	86.98	n/a	n/a	n/a
	SS_supercontig_1.1	324049	324173	2777073	93.60	n/a	n/a	n/a
	SS_supercontig_1.1	324462	324588	2777073	85.83	n/a	n/a	n/a
	SS_supercontig_1.1	323927	324008	2777073	90.24	n/a	n/a	n/a
	SS_supercontig_1.1	324306	324403	2777073	87.76	n/a	n/a	n/a
	SS_supercontig_1.1	324871	325184	2777073	87.30	n/a	n/a	n/a
blat_oligo	botrytisP00081134	323758	323817	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1 . min_over_threshold:0.28 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081135	324151	324259	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.4 . min_over_threshold:0.31 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081136	324221	324329	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.01 . min_over_threshold:0.29 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081137	324246	324354	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.4 . min_over_threshold:0.39 . percent_hyb_over_threshold:7.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081138	324315	324374	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.05 . min_over_threshold:0.31 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081139	324394	324519	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.1 . min_over_threshold:0.31 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081140	324700	324759	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.05 . min_over_threshold:0.24 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081141	324901	324960	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:0.75 . min_over_threshold:0.39 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00081142	325036	325146	60	n/a	n/a	n/a	array_gene:BofuT4_P058390_1 . max_over_threshold:1.07 . min_over_threshold:0.39 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00196995	323545	323604	60	n/a	n/a	n/a	array_gene:CL_bt4_SuperContig_51_1_bt4ctg_0755_006_Contig1_v5 . max_over_threshold:1 . min_over_threshold:0.31 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog