GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P053530.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_07147	1	451	451	n/a	95.15	474	92.24	0.22	0.0	hypothetical protein K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	ssl:SS1G_05447	1	451	451	Gaps:2	93.93	478	87.53	3.79	0.0	hypothetical protein K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	ncr:NCU06722	20	418	399	Gaps:7	82.69	491	71.67	12.32	1e-178	tryptophanyl-tRNA synthetase K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	pan:PODANSg8929	6	418	413	Gaps:7	85.42	487	68.51	11.06	1e-170	hypothetical protein K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	act:ACLA_093260	3	419	417	Gaps:4	97.00	434	61.28	14.96	1e-155	tryptophanyl-tRNA synthetase K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	afv:AFLA_062390	3	419	417	Gaps:4	97.23	433	59.86	15.91	1e-151	tryptophanyl-tRNA synthetase K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	nfi:NFIA_033950	3	419	417	Gaps:4	97.23	433	60.81	15.20	1e-150	tryptophanyl-tRNA synthetase K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	pcs:Pc20g05510	5	419	415	Gaps:5	96.55	435	60.00	15.95	1e-150	Pc20g05510 K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	ssl:SS1G_13632	4	414	411	Gaps:4	96.01	426	60.15	15.65	1e-143	hypothetical protein K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
	mgr:MGG_09540	21	415	395	Gaps:48	78.17	449	71.51	12.82	1e-143	MG09540.4 hypothetical protein K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
blastp_uniprot_sprot	sp\|Q12109\|SYWC_YEAST	20	415	396	Gaps:4	90.74	432	57.14	18.11	1e-136	Tryptophanyl-tRNA synthetase cytoplasmic OS Saccharomyces cerevisiae GN WRS1 PE 1 SV 1
	sp\|Q09692\|SYWC_SCHPO	20	414	395	Gaps:8	98.99	395	56.52	16.88	1e-130	Tryptophanyl-tRNA synthetase cytoplasmic OS Schizosaccharomyces pombe GN wrs1 PE 1 SV 1
	sp\|Q6P7B0\|SYWC_RAT	23	412	390	Gaps:12	79.42	481	56.54	14.40	1e-120	Tryptophanyl-tRNA synthetase cytoplasmic OS Rattus norvegicus GN Wars PE 1 SV 2
	sp\|P23612\|SYWC_RABIT	23	414	392	Gaps:12	80.84	475	55.47	15.36	1e-119	Tryptophanyl-tRNA synthetase cytoplasmic OS Oryctolagus cuniculus GN WARS PE 2 SV 3
	sp\|P32921\|SYWC_MOUSE	6	412	407	Gaps:13	83.16	481	54.25	15.00	1e-119	Tryptophanyl-tRNA synthetase cytoplasmic OS Mus musculus GN Wars PE 1 SV 2
	sp\|Q5R4J1\|SYWC_PONAB	23	412	390	Gaps:12	80.93	472	55.24	15.45	1e-119	Tryptophanyl-tRNA synthetase cytoplasmic OS Pongo abelii GN WARS PE 2 SV 2
	sp\|P17248\|SYWC_BOVIN	23	414	392	Gaps:12	80.67	476	54.69	15.89	1e-118	Tryptophanyl-tRNA synthetase cytoplasmic OS Bos taurus GN WARS PE 1 SV 3
	sp\|P23381\|SYWC_HUMAN	23	412	390	Gaps:12	81.10	471	54.97	15.45	1e-118	Tryptophanyl-tRNA synthetase cytoplasmic OS Homo sapiens GN WARS PE 1 SV 2
	sp\|Q55DZ8\|SYWC_DICDI	21	412	392	Gaps:7	96.25	400	49.09	20.26	1e-108	Tryptophanyl-tRNA synthetase cytoplasmic OS Dictyostelium discoideum GN trpS PE 3 SV 1
	sp\|O96771\|SYW_ENCCU	19	406	388	Gaps:10	98.18	385	42.33	20.90	2e-83	Tryptophanyl-tRNA synthetase OS Encephalitozoon cuniculi GN ECU11_0530 PE 1 SV 2
blastp_pdb	3kt8_D	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt8_C	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt8_B	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt8_A	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt6_D	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt6_C	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt6_B	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt6_A	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt3_D	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
	3kt3_C	20	415	396	Gaps:4	89.50	438	57.14	18.11	1e-137	mol:protein length:438 Tryptophanyl-tRNA synthetase cytoplasmic
rpsblast_cdd	gnl\|CDD\|166127	21	413	393	Gaps:9	100.00	384	54.43	18.23	1e-150	PLN02486 PLN02486 aminoacyl-tRNA ligase.
	gnl\|CDD\|171368	22	402	381	Gaps:35	96.20	368	40.96	18.93	1e-92	PRK12285 PRK12285 tryptophanyl-tRNA synthetase Reviewed.
	gnl\|CDD\|161780	97	428	332	Gaps:33	99.70	328	37.00	14.37	8e-85	TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
	gnl\|CDD\|173903	100	387	288	Gaps:38	100.00	280	33.21	13.93	6e-75	cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs which are involved in ATP binding.
	gnl\|CDD\|30529	94	401	308	Gaps:38	95.54	314	29.00	16.67	3e-58	COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|169485	94	398	305	Gaps:83	91.94	335	31.17	14.29	3e-15	PRK08560 PRK08560 tyrosyl-tRNA synthetase Validated.
	gnl\|CDD\|144245	95	386	292	Gaps:41	98.63	291	22.65	15.68	9e-15	pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
	gnl\|CDD\|30511	89	320	232	Gaps:32	58.85	401	21.61	13.98	2e-12	COG0162 TyrS Tyrosyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|167105	258	401	144	Gaps:20	45.12	328	26.35	16.89	2e-08	PRK00927 PRK00927 tryptophanyl-tRNA synthetase Reviewed.
	gnl\|CDD\|161781	96	207	112	Gaps:13	31.56	377	26.89	16.81	2e-07	TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
rpsblast_kog	gnl\|CDD\|37356	20	414	395	Gaps:11	97.23	397	60.62	16.32	1e-155	KOG2145 KOG2145 KOG2145 Cytoplasmic tryptophanyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
rpsblast_kog	gnl\|CDD\|37355	257	421	165	Gaps:23	48.89	360	23.86	13.07	3e-08	KOG2144 KOG2144 KOG2144 Tyrosyl-tRNA synthetase cytoplasmic [Translation ribosomal structure and biogenesis].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCMA_553945	85570	86318	643	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_537139	85577	86318	637	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCIA_546291	85593	86473	726	99.86	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCIA_533684	85593	86311	613	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCIA_537862	85600	86227	521	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_550835	85766	86586	668	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_550461	85766	86620	701	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ABA8YG23FM1	86198	86913	668	100.00	100.00	n/a	BT4 young mycelium library
	PD0AGA11YC12CM1	86443	87131	689	99.71	100.00	n/a	BT4 mycelium - different stresses library
	YCOA_569789	85566	86113	442	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_553334	85566	86318	647	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_571279	85567	86465	745	99.87	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_547991	85567	86100	428	99.77	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_558083	85567	86226	554	99.82	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_555353	85567	86102	430	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_550805	85567	86318	646	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_553945	85570	86318	643	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	BcA1_3758_H01	85567	86440	835	100.00	85.63	n/a	BC A1 mycelium
	B1BC_045_028_E05	85566	86423	706	99.29	100.00	n/a	BC ATCC 58025 (G3)
	PD0ADA11YD17CM1	86688	87310	623	99.84	100.00	n/a	B0510 mycelium - carbon sources library
	PD0ABA8YG23NM1r	86647	87457	811	99.88	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_50_1_bt4ctg_0696_012.Contig1_v5	85566	87457	1739	99.88	100.00	n/a	all_lib_clone_nr:4
sim4_Ss_allest	G786P584RA10.T0	86134	86892	749	86.82	95.19	n/a	Ss ESTs grown as mycelia at neutral pH
sim4_Ss_allest	G786P584FA10.T0	85624	86553	818	86.74	94.99	n/a	Ss ESTs grown as mycelia at neutral pH
blastx_uniprot_sprot	Q12109	85629	87015	432	57.25	94.21	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Saccharomyces cerevisiae (Baker's yeast)
	Q09692	85629	86967	395	58.82	98.99	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Schizosaccharomyces pombe (Fission yeast)
	Q6P7B0	85683	86961	481	59.41	77.34	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Rattus norvegicus (Rat)
	Q5R4J1	85587	86961	472	55.50	84.75	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Pongo pygmaeus (Orangutan)
	P32921	85587	86961	481	56.50	83.16	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Mus musculus (Mouse)
	P23381	85587	86961	471	55.25	84.93	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Homo sapiens (Human)
	P23612	85683	86961	475	58.33	78.32	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Oryctolagus cuniculus (Rabbit)
	P17248	85683	86961	476	57.53	78.15	n/a	Tryptophanyl-tRNA synthetase cytoplasmic - Bos taurus (Bovine)
	O96771	85629	86943	385	45.36	97.92	n/a	Tryptophanyl-tRNA synthetase - Encephalitozoon cuniculi
	Q97ZX0	85692	86931	380	47.40	91.05	n/a	Tryptophanyl-tRNA synthetase - Sulfolobus solfataricus
blastx_uniprot_trembl	Q870U0	85629	87135	491	72.41	92.26	n/a	Probable tryptophan--tRNA ligase - Neurospora crassa
	A8NGA0	85629	86964	435	61.28	89.66	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7#130
	Q6CW15	85602	87000	432	57.77	95.37	n/a	Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	A1CFH8	85554	86982	434	64.22	97.24	n/a	Tryptophanyl-tRNA synthetase - Aspergillus clavatus
	A1CYK9	85554	86982	433	63.51	97.46	n/a	Tryptophanyl-tRNA synthetase - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q0CDM3	85554	86982	428	61.84	96.73	n/a	Tryptophanyl-tRNA synthetase - Aspergillus terreus (strain NIH 2624)
	Q6CFA0	85560	86970	438	59.81	95.43	n/a	Similar to sp\|Q12109 Saccharomyces cerevisiae Tryptophanyl-tRNA synthetase - Yarrowia lipolytica (Candida lipolytica)
blastx_FNG30_prot	SS1G_05447.1	85572	87147	478	92.16	98.74	n/a	sclerotinia_sclerotiorum hypothetical protein translation 479 aa
	NCU06722.2	85629	87135	491	72.41	92.26	n/a	Neurospora crassa hypothetical protein translation 492 aa
	jgi:Triree:16635	85629	86967	395	70.13	100.00	n/a	Trichoderma reesei
	SS1G_13632.1	85581	86967	426	62.35	96.01	n/a	sclerotinia_sclerotiorum hypothetical protein translation 427 aa
	jgi:Phchr1:853:fgenesh1_pg.C_s	85575	86943	448	60.85	89.51	n/a	Phanerochaete chrysosporium
	RO3G_16975.1	85632	86958	414	62.24	92.75	n/a	rhizopus_oryzae hypothetical protein translation 415 aa
	gi:50303855:ref:XP_451874.1	85602	87000	432	57.77	95.37	n/a	Kluyveromyces lactis unnamed protein product
	gi:50290293:ref:XP_447578.1:	85632	87015	425	59.16	95.06	n/a	Candida glabrata CBS138 hypothetical protein CAGL0I07579g
	ORFP:19683	85629	86970	432	59.18	90.74	n/a	Saccharomyces mikatae YOL097C Contig c394 9915-11213
	SS1G_05447.1	85572	87147	478	92.16	98.74	n/a	sclerotinia_sclerotiorum hypothetical protein translation 479 aa
	gi:50546385:ref:XP_500662.1	85560	86970	438	59.81	95.43	n/a	Yarrowia lipolytica hypothetical protein
sim4_B0510_genes	BC1G_07147.1	85572	87150	1425	99.79	100.00	n/a	n/a
sim4_SS_genes	SS1G_05447.1	85572	87136	1437	86.41	97.77	n/a	n/a
sim4_SS_genes	SS1G_05447.1	85572	87136	1437	86.41	97.77	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.36	85471	87485	299589	99.75	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.6	86355	87009	2040374	85.65	n/a	n/a	n/a
	SS_supercontig_1.6	86025	86324	2040374	89.33	n/a	n/a	n/a
	SS_supercontig_1.6	87037	87125	2040374	91.01	n/a	n/a	n/a
	SS_supercontig_1.6	85567	85949	2040374	86.16	n/a	n/a	n/a
blat_oligo	botrytisP00077343	85589	85648	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:17.51 . min_over_threshold:2.7 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077345	85605	85664	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:14.34 . min_over_threshold:2.53 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077346	85799	85858	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:33.75 . min_over_threshold:7.72 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077347	86126	86185	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:61.09 . min_over_threshold:13.21 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077348	86255	86314	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:61.08 . min_over_threshold:13.69 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077349	86484	86543	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:142.66 . min_over_threshold:46.07 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077350	86494	86553	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:135.88 . min_over_threshold:38.64 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077351	86509	86568	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:174.47 . min_over_threshold:43.81 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00077352	86974	87033	60	n/a	n/a	n/a	array_gene:BofuT4_P053530_1 . max_over_threshold:60.3 . min_over_threshold:10.57 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog