GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P037370.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_04746	39	838	800	n/a	83.41	886	67.25	0.00	0.0	hypothetical protein
	ssl:SS1G_06467	38	892	855	Gaps:16	83.71	939	62.60	2.16	0.0	hypothetical protein
	fgr:FG00592.1	51	892	842	Gaps:74	68.47	926	41.32	9.31	2e-60	hypothetical protein
	mgr:MGG_00124	51	862	812	Gaps:34	52.00	950	45.34	9.72	3e-36	MG00124.4 hypothetical protein
	ncr:NCU07282	40	892	853	Gaps:62	57.44	1062	42.79	10.00	5e-34	hypothetical protein
	pno:SNOG_08195	41	866	826	Gaps:46	53.71	996	43.74	10.65	1e-28	hypothetical protein
	act:ACLA_039620	51	866	816	Gaps:80	51.87	908	42.46	11.68	3e-23	hypothetical protein
	afm:AFUA_3G11740	51	866	816	Gaps:59	52.38	905	40.93	12.03	1e-21	RNAPII degradation factor Def1
	nfi:NFIA_065590	51	866	816	Gaps:59	52.61	901	40.51	13.08	5e-21	hypothetical protein
	pcs:Pc18g01270	39	465	427	Gaps:22	24.86	869	49.07	18.06	8e-21	Pc18g01270
blastp_uniprot_sprot	sp\|O43024\|YGVA_SCHPO	42	123	82	Gaps:5	8.62	963	46.99	21.69	8e-13	CUE domain-containing protein C354.10 OS Schizosaccharomyces pombe GN SPBC354.10 PE 1 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|169088	224	582	359	Gaps:35	42.07	794	21.56	7.78	5e-13	PRK07764 PRK07764 DNA polymerase III subunits gamma and tau Validated.
	gnl\|CDD\|165504	259	525	267	Gaps:29	13.60	3243	26.53	9.30	5e-11	PHA03245 PHA03245 large tegument protein UL36 Provisional.
	gnl\|CDD\|165506	205	697	493	Gaps:123	14.44	3151	32.31	10.11	1e-09	PHA03247 PHA03247 large tegument protein UL36 Provisional.
	gnl\|CDD\|145811	63	104	42	n/a	100.00	42	23.81	35.71	3e-09	pfam02845 CUE CUE domain. CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway tollip and TAB2.
	gnl\|CDD\|168152	186	401	216	Gaps:20	29.94	698	36.84	11.00	6e-09	PRK05648 PRK05648 DNA polymerase III subunits gamma and tau Reviewed.
	gnl\|CDD\|168764	208	504	297	Gaps:44	31.25	816	25.88	9.80	1e-07	PRK07003 PRK07003 DNA polymerase III subunits gamma and tau Validated.
rpsblast_kog	gnl\|CDD\|38804	273	701	429	Gaps:71	19.91	2220	17.65	11.09	5e-15	KOG3598 KOG3598 KOG3598 Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCGA_532780	478677	479212	536	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572302	477997	478631	550	99.45	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_536725	478797	479294	498	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_534531	478924	479586	607	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_561116	479944	480329	386	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_559598	477780	478434	571	99.30	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ACA2YO17FM1	479657	480442	786	99.75	100.00	n/a	BT4 mycelium - pH stress library
	PD0AGA18YM23CM1	480039	480631	593	99.66	100.00	n/a	BT4 mycelium - different stresses library
	YCKA_564761	477626	478359	650	99.69	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_563821	477626	478234	525	99.62	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_580782	477648	478277	546	99.63	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_576395	477680	478407	644	99.53	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_572300	477698	478356	575	99.48	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ADA1YM15CM1	480068	480778	711	99.86	100.00	n/a	B0510 mycelium - carbon sources library
	PD0ADA13YP09CM1	480089	480754	666	99.40	100.00	n/a	B0510 mycelium - carbon sources library
	BcA1_3493_O06	480307	481039	808	99.03	89.73	n/a	BC A1 mycelium
	PD0ACA11YH08FM1	480184	480853	670	100.00	100.00	n/a	BT4 mycelium - pH stress library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_29_1_bt4ctg_0523_003.Contig1_v5	479657	480853	1197	100.00	100.00	n/a	all_lib_clone_nr:5
sim4_Ss_allest	G781P558RE6.T0	479642	480326	757	87.03	87.58	n/a	Ss ESTs grown as developing sclerotia
	G787P5113RG10.T0	478489	479183	757	86.24	64.33	n/a	Ss ESTs grown as developing apothecia
	G787P5113FG10.T0	478343	479183	846	85.22	84.75	n/a	Ss ESTs grown as developing apothecia
	G781P558FE6.T0	480527	481199	828	88.40	70.77	n/a	Ss ESTs grown as developing sclerotia
	G781P590FG9.T0	480534	481197	687	87.48	94.18	n/a	Ss ESTs grown as developing sclerotia
	G781P590RG9.T0	480534	481198	679	87.67	95.58	n/a	Ss ESTs grown as developing sclerotia
blastx_uniprot_sprot	Q86YZ3	479403	480701	2850	28.69	29.96	n/a	Hornerin - Homo sapiens (Human)
blastx_uniprot_trembl	A4RG88	477721	480695	950	48.73	95.68	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q2H1C9	477718	480695	960	49.37	98.75	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q7S985	477718	480695	1062	49.25	87.76	n/a	Predicted protein - Neurospora crassa
	A6QRJ9	477718	480701	807	51.05	100.00	n/a	Putative uncharacterized protein - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	Q0UJ69	477718	480698	996	49.06	90.86	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A1D6Q1	477718	480701	901	47.07	98.56	n/a	Putative uncharacterized protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WY44	477718	480701	905	46.52	98.56	n/a	RNAPII degradation factor Def1 putative - Aspergillus fumigatus (Sartorya fumigata)
	A1CKS3	477718	480701	908	46.82	98.57	n/a	Putative uncharacterized protein - Aspergillus clavatus
	Q2H1C9	477718	480695	960	49.37	98.75	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q7S985	477718	480695	1062	49.25	87.76	n/a	Predicted protein - Neurospora crassa
	A6QRJ9	477718	480701	807	51.05	100.00	n/a	Putative uncharacterized protein - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	Q0UJ69	477718	480698	996	49.06	90.86	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A1D6Q1	477718	480701	901	47.07	98.56	n/a	Putative uncharacterized protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WY44	477718	480701	905	46.52	98.56	n/a	RNAPII degradation factor Def1 putative - Aspergillus fumigatus (Sartorya fumigata)
	A1CKS3	477718	480701	908	46.82	98.57	n/a	Putative uncharacterized protein - Aspergillus clavatus
blastx_FNG30_prot	SS1G_06467.1	477718	480701	939	88.47	99.79	n/a	sclerotinia_sclerotiorum hypothetical protein translation 940 aa
	FG00592.1	477718	480695	926	53.36	99.57	n/a	fusarium_graminearum hypothetical protein 927 aa
	CHG04417.1	477718	480695	960	49.37	98.75	n/a	Chaetomium globosum hypothetical protein translation 961 aa
	MGG_00124.5	477721	480695	950	48.73	95.68	n/a	magnaporthe_grisea hypothetical protein translation 951 aa
	jgi:Triree:46143	477718	480695	907	52.11	99.23	n/a	Trichoderma reesei
	NCU07282.2	477718	480695	1062	49.25	87.76	n/a	Neurospora crassa hypothetical protein translation 1063 aa
	SNU08195.1	477718	480698	996	49.06	90.86	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70999456:ref:XP_754447.1:	477718	480701	905	46.52	98.56	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu3g11740
	AN2871	477718	480701	870	47.36	100.00	n/a	Aspergillus nidulans AN2871.3 hypothetical protein translation 871 aa
	AO090003000732	477718	480701	902	45.38	98.45	n/a	Aspergillus oryzae predicted protein
	SS1G_06467.1	477718	480701	939	88.47	99.79	n/a	sclerotinia_sclerotiorum hypothetical protein translation 940 aa
	FG00592.1	477718	480695	926	53.36	99.57	n/a	fusarium_graminearum hypothetical protein 927 aa
	CHG04417.1	477718	480695	960	49.37	98.75	n/a	Chaetomium globosum hypothetical protein translation 961 aa
	jgi:Triree:46143	477718	480695	907	52.11	99.23	n/a	Trichoderma reesei
	NCU07282.2	477718	480695	1062	49.25	87.76	n/a	Neurospora crassa hypothetical protein translation 1063 aa
	SNU08195.1	477718	480698	996	49.06	90.86	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70999456:ref:XP_754447.1:	477718	480701	905	46.52	98.56	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu3g11740
	AN2871	477718	480701	870	47.36	100.00	n/a	Aspergillus nidulans AN2871.3 hypothetical protein translation 871 aa
	AO090003000732	477718	480701	902	45.38	98.45	n/a	Aspergillus oryzae predicted protein
sim4_B0510_genes	BC1G_04746.1	477718	481660	2661	99.96	100.00	n/a	n/a
sim4_SS_genes	SS1G_06467.1	477718	480704	2820	86.57	97.98	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.20	474212	480474	398549	99.82	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.8	480260	480706	1647494	88.81	n/a	n/a	n/a
	SS_supercontig_1.8	479818	480249	1647494	86.34	n/a	n/a	n/a
	SS_supercontig_1.8	479430	479817	1647494	86.08	n/a	n/a	n/a
	SS_supercontig_1.8	478102	478431	1647494	86.97	n/a	n/a	n/a
	SS_supercontig_1.8	477836	478037	1647494	90.59	n/a	n/a	n/a
	SS_supercontig_1.8	478895	479114	1647494	88.64	n/a	n/a	n/a
	SS_supercontig_1.8	479128	479357	1647494	86.52	n/a	n/a	n/a
	SS_supercontig_1.8	478612	478904	1647494	83.28	n/a	n/a	n/a
	SS_supercontig_1.8	478434	478607	1647494	83.33	n/a	n/a	n/a
	SS_supercontig_1.8	477685	477752	1647494	91.18	n/a	n/a	n/a
	SS_supercontig_1.8	480260	480706	1647494	88.81	n/a	n/a	n/a
blat_oligo	botrytisP00065060	479148	479207	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:209.56 . min_over_threshold:11.67 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00065061	479407	479466	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:158.18 . min_over_threshold:13.28 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00065062	479506	479565	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:183.02 . min_over_threshold:35.66 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00065063	479811	479870	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:191.27 . min_over_threshold:51.38 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00065064	479903	479962	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:203.78 . min_over_threshold:59.82 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00065065	480068	480127	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:146.61 . min_over_threshold:34.72 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00065066	480150	480209	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:53.43 . min_over_threshold:9.18 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00065068	480260	480319	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:82.4 . min_over_threshold:12.5 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00065069	480422	480481	60	n/a	n/a	n/a	array_gene:BofuT4_P037370_1 . max_over_threshold:66.7 . min_over_threshold:10.34 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog