GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P035970.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_03990	1	429	429	n/a	39.98	1073	93.24	0.23	0.0	hypothetical protein
	ssl:SS1G_01217	1	425	425	Gaps:4	39.91	1075	62.94	13.29	1e-153	hypothetical protein
	bfu:BC1G_07752	16	426	411	Gaps:29	38.76	1099	37.09	19.72	4e-71	hypothetical protein
	ssl:SS1G_09449	1	426	426	Gaps:39	42.36	1027	35.63	21.61	2e-67	hypothetical protein
	ang:An08g04820	24	425	402	Gaps:22	37.06	1074	38.19	20.60	9e-67	hypothetical protein
	afv:AFLA_079380	48	425	378	Gaps:12	39.71	957	35.00	23.68	2e-62	NRPS-like enzyme putative
	aor:AO090005000688	48	425	378	Gaps:12	35.95	1057	34.74	23.95	4e-62	hypothetical protein
	ang:An09g00450	21	426	406	Gaps:65	40.56	1117	31.13	20.31	7e-54	hypothetical protein
	act:ACLA_021860	16	424	409	Gaps:32	38.13	1036	33.42	21.01	1e-51	nonribosomal peptide synthetase putative
	ani:AN2064.2	16	424	409	Gaps:39	38.73	1038	34.83	18.16	1e-51	hypothetical protein
blastp_uniprot_sprot	sp\|Q70LM4\|LGRD_BREPA	50	328	279	Gaps:22	5.37	5085	25.27	18.32	3e-09	Linear gramicidin synthase subunit D OS Brevibacillus parabrevis GN lgrD PE 1 SV 1
	sp\|Q54B49\|PKS45_DICDI	21	278	258	Gaps:32	8.46	3097	24.81	21.76	5e-08	Probable polyketide synthase 45 OS Dictyostelium discoideum GN pks45 PE 3 SV 1
	sp\|Q54FN2\|PKS34_DICDI	54	270	217	Gaps:37	8.19	3078	25.00	19.44	2e-07	Probable polyketide synthase 34 OS Dictyostelium discoideum GN pks34 PE 3 SV 1
	sp\|Q54B51\|PKS44_DICDI	12	275	264	Gaps:30	9.10	3078	24.29	19.29	7e-07	Probable polyketide synthase 44 OS Dictyostelium discoideum GN pks44 PE 3 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|149205	54	289	236	Gaps:16	98.78	245	28.10	18.18	2e-32	pfam07993 NAD_binding_4 Male sterility protein. This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included.
	gnl\|CDD\|162515	52	388	337	Gaps:41	87.19	367	27.81	21.25	9e-31	TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
	gnl\|CDD\|33129	52	298	247	Gaps:19	64.92	382	27.42	21.37	2e-23	COG3320 COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis transport and catabolism].
	gnl\|CDD\|163268	29	325	297	Gaps:39	22.03	1389	26.47	16.01	7e-13	TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31) product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi lysine is synthesized via aminoadipate. Currently all members of this family are fungal.
	gnl\|CDD\|30800	52	243	192	Gaps:31	55.10	314	26.01	15.61	6e-11	COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism].
rpsblast_kog	no results

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCMA_557057	129206	129876	671	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_552868	129206	129876	671	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_552866	129206	129865	660	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_568637	129206	129848	643	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_556894	129206	129808	602	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_562735	129206	129760	555	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_561373	129206	129762	557	99.82	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_562956	129206	129346	140	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	no results
blastx_uniprot_sprot	no results
blastx_uniprot_trembl	A2QR54	126669	129990	1074	42.07	93.39	n/a	Contig An08c0130 complete genome - Aspergillus niger
	Q2URU3	126669	129990	1057	39.56	95.18	n/a	Predicted protein - Aspergillus oryzae
	A2QT17	126648	129993	1117	37.14	94.00	n/a	Remark: LYS2 of S. cerevisiae has a systematic name of YBR115C - Aspergillus niger
	Q2UR66	126654	129570	949	34.95	91.36	n/a	RIB40 genomic DNA SC005 - Aspergillus oryzae
	Q5BBL6	127559	129987	1038	35.52	74.86	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	A1CPA1	126642	129987	1036	34.40	93.44	n/a	Nonribosomal peptide synthetase putative - Aspergillus clavatus
	A2R143	127574	129987	1040	35.24	75.58	n/a	Contig An12c0380 complete genome - Aspergillus niger
blastx_FNG30_prot	SS1G_01217.1	126633	129990	1075	74.63	99.35	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1076 aa
	AO090005000688	126669	129990	1057	39.56	95.18	n/a	Aspergillus oryzae predicted protein
	AO090005000952	126654	129570	949	34.95	91.36	n/a	Aspergillus oryzae putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes
	AN2064	127559	129987	1038	35.52	74.86	n/a	Aspergillus nidulans AN2064.3 conserved hypothetical protein translation 1039 aa
	AO090010000349	126666	129987	1054	34.43	92.60	n/a	Aspergillus oryzae predicted protein
	AO090010000426	127589	129987	1043	34.38	73.06	n/a	Aspergillus oryzae predicted protein
	NCU05000.2	127580	129987	1052	31.87	73.38	n/a	Neurospora crassa hypothetical protein translation 1053 aa
	jgi:Triree:31862	127505	129987	1059	32.38	76.11	n/a	Trichoderma reesei
	FG10617.1	127502	129879	1068	33.91	70.69	n/a	fusarium_graminearum hypothetical protein 1069 aa
	CHG00041.1	127580	129987	1044	31.41	73.18	n/a	Chaetomium globosum hypothetical protein translation 1045 aa
sim4_B0510_genes	no results
sim4_SS_genes	SS1G_01217.1	126666	129507	3228	82.84	57.03	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.21	125343	132046	419089	99.61	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	129032	129380	2719746	79.66	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	129416	129588	2719746	83.24	n/a	n/a	n/a
blat_oligo	botrytisP00063990	128931	128990	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:15.92 . min_over_threshold:0.55 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063991	129015	129074	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:34.41 . min_over_threshold:1.17 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063992	129126	129185	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:29.13 . min_over_threshold:1.18 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063994	129367	129426	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:16.71 . min_over_threshold:0.71 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063995	129444	129503	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:13.57 . min_over_threshold:0.42 . percent_hyb_over_threshold:82.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063996	129574	129633	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:7.63 . min_over_threshold:0.45 . percent_hyb_over_threshold:60.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063997	129629	129688	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:12.4 . min_over_threshold:0.54 . percent_hyb_over_threshold:89.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063998	129643	129702	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:11.95 . min_over_threshold:0.55 . percent_hyb_over_threshold:78.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00063999	129863	129922	60	n/a	n/a	n/a	array_gene:BofuT4_P035970_1 . max_over_threshold:25.06 . min_over_threshold:1.06 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog