GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P024920.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_07709	1	241	241	n/a	97.18	248	90.46	0.00	1e-124	hypothetical protein
	mgr:MGG_03665	1	320	320	Gaps:25	95.50	311	49.83	9.76	3e-59	MG03665.4 hypothetical protein
	fgr:FG08527.1	2	320	319	Gaps:28	94.86	311	50.17	12.54	1e-55	hypothetical protein
	pan:PODANSg4459	5	317	313	Gaps:30	91.33	323	48.81	12.20	3e-55	hypothetical protein
	ani:AN8696.2	3	321	319	Gaps:23	95.92	319	43.79	15.36	6e-55	hypothetical protein
	pno:SNOG_07687	20	305	286	Gaps:20	92.41	290	47.01	16.42	1e-53	hypothetical protein
	ssl:SS1G_14209	1	222	222	Gaps:40	96.81	188	65.93	9.89	8e-53	hypothetical protein
	nfi:NFIA_048610	2	329	328	Gaps:53	97.38	344	42.69	14.03	4e-51	COG1590 daomin protein
	ure:UREG_04488	5	324	320	Gaps:17	96.94	327	39.12	16.72	8e-47	hypothetical protein
	ang:An12g08400	3	302	300	Gaps:33	93.43	335	41.85	10.86	1e-46	hypothetical protein
blastp_uniprot_sprot	sp\|Q6DHJ1\|TYW3_DANRE	27	298	272	Gaps:72	82.07	251	39.32	19.42	5e-21	tRNA wybutosine-synthesizing protein 3 homolog OS Danio rerio GN tyw3 PE 2 SV 1
	sp\|P53177\|TYW3_YEAST	27	258	232	Gaps:46	71.79	273	37.24	17.86	4e-18	tRNA wybutosine-synthesizing protein 3 OS Saccharomyces cerevisiae GN TYW3 PE 1 SV 1
	sp\|Q5E9U4\|TYW3_BOVIN	27	331	305	Gaps:71	93.02	258	35.42	17.92	2e-17	tRNA wybutosine-synthesizing protein 3 homolog OS Bos taurus GN TYW3 PE 2 SV 1
	sp\|Q19QT9\|TYW3_PIG	27	331	305	Gaps:72	93.05	259	34.44	20.75	1e-16	tRNA wybutosine-synthesizing protein 3 homolog OS Sus scrofa GN TYW3 PE 2 SV 1
	sp\|Q5R5S9\|TYW3_PONAB	27	268	242	Gaps:66	68.99	258	39.33	22.47	3e-16	tRNA wybutosine-synthesizing protein 3 homolog OS Pongo abelii GN TYW3 PE 2 SV 1
	sp\|Q641F8\|TYW3_XENLA	27	268	242	Gaps:64	70.92	251	38.76	17.98	5e-16	tRNA wybutosine-synthesizing protein 3 homolog OS Xenopus laevis GN tyw3 PE 2 SV 1
	sp\|Q8W4K1\|TYW23_ARATH	27	270	244	Gaps:51	19.80	995	35.53	20.81	1e-15	tRNA wybutosine-synthesizing protein 2/3/4 OS Arabidopsis thaliana GN At4g04670 PE 2 SV 1
	sp\|Q6IPR3\|TYW3_HUMAN	27	268	242	Gaps:66	68.73	259	38.76	22.47	4e-15	tRNA wybutosine-synthesizing protein 3 homolog OS Homo sapiens GN TYW3 PE 2 SV 2
	sp\|Q8BSA9\|TYW3_MOUSE	27	327	301	Gaps:70	90.66	257	35.19	16.74	6e-13	tRNA wybutosine-synthesizing protein 3 homolog OS Mus musculus GN Tyw3 PE 1 SV 1
	sp\|Q8H4D4\|TYW23_ORYSJ	27	269	243	Gaps:53	18.60	1043	38.66	15.46	1e-09	tRNA wybutosine-synthesizing protein 2/3/4 OS Oryza sativa subsp. japonica GN Os07g0515000 PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|145695	10	267	258	Gaps:73	97.91	191	51.34	12.30	8e-50	pfam02676 TYW3 Methyltransferase TYW3. The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3' position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner.
	gnl\|CDD\|31778	30	271	242	Gaps:66	84.62	208	36.36	14.77	1e-19	COG1590 COG1590 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|167764	31	269	239	Gaps:72	89.18	194	34.10	16.76	4e-15	PRK04235 PRK04235 hypothetical protein Provisional.
rpsblast_kog	gnl\|CDD\|36442	1	305	305	Gaps:57	97.66	256	39.60	14.40	7e-35	KOG1228 KOG1228 KOG1228 Uncharacterized conserved protein [Function unknown].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	BcA1_3486_G12	12656	13141	745	97.92	57.99	n/a	BC A1 mycelium
	AL112145	12439	13035	691	98.71	78.44	n/a	BT4 Mycelium - nitrate starvation library
	PD0AHA18YG22CM1	12392	13037	592	99.83	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA9YA05CM1	12399	13032	580	99.66	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA1YN02CM1	12397	13087	636	99.69	100.00	n/a	BT4 appressoria on teflon library
	B5BC_116_295_G09	13455	14306	734	99.86	100.00	n/a	B0510 In planta material
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_14_1_bt4ctg_0323_001.Contig1_v5	12392	13087	642	99.84	100.00	n/a	all_lib_clone_nr:3
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_14_1_bt4ctg_0323_002.Contig1_v5	13455	14371	799	100.00	100.00	n/a	all_lib_clone_nr:12
sim4_Ss_allest	G787P521RF10.T0	12983	13365	587	85.01	65.93	n/a	Ss ESTs grown as developing apothecia
	G787P579RG2.T0	12393	13184	782	85.74	65.47	n/a	Ss ESTs grown as developing apothecia
	G787P584RB5.T0	12393	13225	794	85.51	69.52	n/a	Ss ESTs grown as developing apothecia
	G787P527FD7.T0	8668	22925	878	86.22	94.19	n/a	Ss ESTs grown as developing apothecia
blastx_uniprot_sprot	P21260	12697	12723	141	100.00	35.46	n/a	Uncharacterized proline-rich protein - Owenia fusiformis
blastx_uniprot_trembl	Q8L685	12697	12723	1009	99.53	42.42	n/a	Pherophorin-dz1 protein precursor - Volvox carteri f. nagariensis
	A4QR70	12407	13432	311	53.29	97.75	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q0UKM7	12425	13375	290	49.47	96.90	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q5ASN4	12413	13432	319	47.12	97.81	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q2H474	12425	13417	683	48.33	48.17	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A7UVF7	12697	12723	147	100.00	47.62	n/a	AGAP011901-PA - Anopheles gambiae str. PEST
	Q0CGH7	12413	13426	326	43.63	96.32	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A2R0F2	12413	13399	335	42.59	96.72	n/a	Contig An12c0280 complete genome - Aspergillus niger
	A4QR70	12407	13432	311	53.29	97.75	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
blastx_FNG30_prot	FG08527.1	12410	13420	311	54.24	94.86	n/a	fusarium_graminearum hypothetical protein 312 aa
	jgi:Triree:37792	12410	13438	315	55.31	98.73	n/a	Trichoderma reesei
	MGG_03665.5	12407	13432	311	53.29	97.75	n/a	magnaporthe_grisea hypothetical protein translation 312 aa
	AN8696	12413	13432	319	47.12	97.81	n/a	Aspergillus nidulans AN8696.3 conserved hypothetical protein translation 320 aa
	CHG06541.1	12425	13417	683	48.33	48.17	n/a	Chaetomium globosum hypothetical protein translation 684 aa
	SS1G_14209.1	12407	12805	188	77.27	70.21	n/a	sclerotinia_sclerotiorum hypothetical protein translation 189 aa
	SNU07687.1	12518	13375	278	49.20	89.93	n/a	Stagonospora nodorum hypothetical protein translation
	CIMG_05859.2	12407	13441	322	42.19	99.38	n/a	Coccidioides immitis hypothetical protein translation 323 aa
	NCU02014.2	12422	13435	426	40.05	93.19	n/a	Neurospora crassa hypothetical protein translation 427 aa
	gi:70984671:ref:XP_747842.1:	12410	13447	310	46.84	97.10	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu6g02350
	MGG_03665.5	12407	13432	311	53.29	97.75	n/a	magnaporthe_grisea hypothetical protein translation 312 aa
	SS1G_14209.1	12407	12805	188	77.27	70.21	n/a	sclerotinia_sclerotiorum hypothetical protein translation 189 aa
	CIMG_05859.2	12407	13441	322	42.19	99.38	n/a	Coccidioides immitis hypothetical protein translation 323 aa
sim4_B0510_genes	BC1G_07709.1	12407	13395	747	99.73	100.00	n/a	n/a
sim4_B0510_genes	BC1G_07709.1	12407	13395	747	99.73	100.00	n/a	n/a
sim4_SS_genes	SS1G_14209.1	12407	13176	567	84.98	75.13	n/a	n/a
sim4_SS_genes	SS1G_14209.1	12407	13176	567	84.98	75.13	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.48	12366	16525	276297	99.83	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.30	12980	13396	231457	85.37	n/a	n/a	n/a
	SS_supercontig_1.30	12404	12612	231457	83.73	n/a	n/a	n/a
	SS_supercontig_1.30	12404	12612	231457	83.73	n/a	n/a	n/a
blat_oligo	botrytisP00055619	12454	12513	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:1.14 . min_over_threshold:0.42 . percent_hyb_over_threshold:17.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055620	12461	12520	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:1.34 . min_over_threshold:0.39 . percent_hyb_over_threshold:28.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055621	12472	12531	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:1.45 . min_over_threshold:0.42 . percent_hyb_over_threshold:17.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055622	12538	12597	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:2.94 . min_over_threshold:0.55 . percent_hyb_over_threshold:57.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055623	12762	12821	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:72.38 . min_over_threshold:10.55 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055624	12991	13050	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:16.75 . min_over_threshold:2.15 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055625	13080	13139	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:19.83 . min_over_threshold:1.72 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055626	13149	13208	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:11.75 . min_over_threshold:1.4 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00055627	13381	13440	60	n/a	n/a	n/a	array_gene:BofuT4_P024920_1 . max_over_threshold:13.27 . min_over_threshold:2.2 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog