GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P006420.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_07804	1	51	51	n/a	77.27	66	100.00	0.00	5e-22	H/ACA ribonucleoprotein complex subunit 3 K11130 H/ACA ribonucleoprotein complex subunit 3
	ssl:SS1G_07872	1	51	51	n/a	77.27	66	96.08	0.00	1e-20	ribosome biogenesis protein Nop10 K11130 H/ACA ribonucleoprotein complex subunit 3
	pcs:Pc22g13990	1	51	51	n/a	78.46	65	90.20	1.96	2e-19	Pc22g13990 K11130 H/ACA ribonucleoprotein complex subunit 3
	ure:UREG_03800	1	51	51	n/a	53.68	95	88.24	3.92	8e-19	H/ACA ribonucleoprotein complex subunit 3
	nfi:NFIA_038110	1	51	51	n/a	77.27	66	86.27	3.92	3e-18	Nop10 family nucleolar RNA-binding protein K11130 H/ACA ribonucleoprotein complex subunit 3
	act:ACLA_001170	1	51	51	n/a	77.27	66	86.27	3.92	4e-18	Nop10 family nucleolar RNA-binding protein K11130 H/ACA ribonucleoprotein complex subunit 3
	fgr:FG09036.1	1	51	51	n/a	76.12	67	80.39	7.84	3e-17	hypothetical protein K11130 H/ACA ribonucleoprotein complex subunit 3
	mgr:MGG_09253	1	51	51	n/a	76.12	67	78.43	13.73	4e-17	MG09253.4 hypothetical protein K11130 H/ACA ribonucleoprotein complex subunit 3
	ani:AN8254.2	1	51	51	Gaps:1	77.61	67	88.46	0.00	5e-17	similar to Required for pre-rRNA pseudouridylation and processing at sites A1 and A2 Nop10p K11130 H/ACA ribonucleoprotein complex subunit 3
	cdu:CD36_33650	1	51	51	Gaps:1	88.14	59	82.69	5.77	9e-17	H/ACA ribonucleoprotein complex subunit putative K11130 H/ACA ribonucleoprotein complex subunit 3
blastp_uniprot_sprot	sp\|Q6CSZ0\|NOP10_KLULA	1	51	51	Gaps:1	91.23	57	82.69	3.85	4e-17	H/ACA ribonucleoprotein complex subunit 3 OS Kluyveromyces lactis GN NOP10 PE 3 SV 1
	sp\|Q6FNL3\|NOP10_CANGA	1	51	51	Gaps:1	91.23	57	82.69	3.85	4e-17	H/ACA ribonucleoprotein complex subunit 3 OS Candida glabrata GN NOP10 PE 3 SV 1
	sp\|Q6Q547\|NOP10_YEAST	1	51	51	Gaps:1	89.66	58	80.77	3.85	4e-16	H/ACA ribonucleoprotein complex subunit 3 OS Saccharomyces cerevisiae GN NOP10 PE 1 SV 1
	sp\|Q74Z52\|NOP10_ASHGO	1	51	51	Gaps:1	91.23	57	76.92	7.69	2e-15	H/ACA ribonucleoprotein complex subunit 3 OS Ashbya gossypii GN NOP10 PE 3 SV 2
	sp\|Q6BQP3\|NOP10_DEBHA	1	51	51	Gaps:1	89.66	58	76.92	3.85	3e-15	H/ACA ribonucleoprotein complex subunit 3 OS Debaryomyces hansenii GN NOP10 PE 3 SV 1
	sp\|Q9P7M5\|NOP10_SCHPO	1	51	51	Gaps:1	81.25	64	75.00	5.77	1e-13	H/ACA ribonucleoprotein complex subunit 3 OS Schizosaccharomyces pombe GN nop10 PE 2 SV 1
	sp\|Q6DRH5\|NOP10_DANRE	1	51	51	Gaps:1	81.25	64	65.38	13.46	3e-12	H/ACA ribonucleoprotein complex subunit 3 OS Danio rerio GN nop10 PE 3 SV 1
	sp\|Q9CQS2\|NOP10_MOUSE	1	51	51	Gaps:1	81.25	64	65.38	9.62	2e-11	H/ACA ribonucleoprotein complex subunit 3 OS Mus musculus GN Nop10 PE 2 SV 1
	sp\|Q9NPE3\|NOP10_HUMAN	1	51	51	Gaps:1	81.25	64	65.38	9.62	2e-11	H/ACA ribonucleoprotein complex subunit 3 OS Homo sapiens GN NOP10 PE 1 SV 1
	sp\|Q9V5P6\|NOP10_DROME	1	51	51	Gaps:1	81.25	64	63.46	13.46	4e-11	H/ACA ribonucleoprotein complex subunit 3 OS Drosophila melanogaster GN CG7637 PE 1 SV 1
blastp_pdb	1y2y_A	1	51	51	Gaps:1	89.66	58	80.77	3.85	9e-17	mol:protein length:58 Ribosome biogenesis protein Nop10
blastp_pdb	2aqa_A	2	51	50	Gaps:1	80.95	63	80.39	3.92	5e-16	mol:protein length:63 H/ACA ribonucleoprotein complex subunit 3
rpsblast_cdd	gnl\|CDD\|146659	3	52	50	Gaps:3	100.00	53	54.72	9.43	4e-14	pfam04135 Nop10p Nucleolar RNA-binding protein Nop10p family. Nop10p is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10p is probably necessary for the stability of these RNPs.
	gnl\|CDD\|32441	1	57	57	Gaps:3	98.31	59	44.83	12.07	2e-08	COG2260 COG2260 Predicted Zn-ribbon RNA-binding protein [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|171869	14	50	37	Gaps:2	69.64	56	51.28	17.95	9e-07	PRK13130 PRK13130 H/ACA RNA-protein complex component Nop10p Reviewed.
rpsblast_kog	gnl\|CDD\|38713	1	58	58	Gaps:1	92.19	64	71.19	6.78	2e-17	KOG3503 KOG3503 KOG3503 H/ACA snoRNP complex subunit NOP10 [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	AL111518	903498	903878	700	95.03	54.57	n/a	BT4 Mycelium - nitrate starvation library
	PD0ACA17YI11FM1	903441	904212	580	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0AEA7YC24CM1	903451	904178	536	99.63	100.00	n/a	BT4 appressoria on teflon library
	YCKA_558300	903434	904301	676	99.70	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_558830	903437	904301	674	99.55	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_535788	903493	904291	607	99.67	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_532636	903543	904441	602	99.67	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_558989	903599	904301	511	99.61	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_560279	903609	904301	501	99.60	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCIA_537845	903612	904297	494	99.60	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_559009	903612	904301	497	99.60	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_580896	903612	904455	546	99.45	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_573212	903652	904305	463	98.27	100.00	n/a	Botrytis cinerea HortResearch libraries
	B4BC_116_259_C07	903435	904301	675	100.00	100.00	n/a	B0510 Germinated spores on bean leaves library
	B4BC_116_239_C04	903437	904301	673	100.00	100.00	n/a	B0510 Germinated spores on bean leaves library
	B4BC_116_237_C07	903437	904300	672	100.00	100.00	n/a	B0510 Germinated spores on bean leaves library
	B4BC_116_274_E11	903441	904282	650	100.00	100.00	n/a	B0510 Germinated spores on bean leaves library
	PD0ADA2YN10CM1	903500	904440	644	100.00	100.00	n/a	B0510 mycelium - carbon sources library
	BcA1_3479_K08	903447	904448	705	99.57	100.00	n/a	BC A1 mycelium
	AL116695	903459	904290	640	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL113056	903477	904301	633	99.37	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA5YC14FM1	903506	904301	604	100.00	100.00	n/a	BT4 young mycelium library
	PD0AHA5YC20CM1	903506	904301	604	99.50	100.00	n/a	BT4 appressoria on teflon library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_2_1_bt4ctg_0081_008.Contig1_v5	903435	904448	717	100.00	100.00	n/a	all_lib_clone_nr:12
sim4_Ss_allest	no results
blastx_uniprot_sprot	no results
blastx_uniprot_trembl	A1CZR7	904082	904261	66	85.00	90.91	n/a	Nop10 family nucleolar RNA-binding protein - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
blastx_uniprot_trembl	A1C4T8	904082	904261	66	85.00	90.91	n/a	Nop10 family nucleolar RNA-binding protein - Aspergillus clavatus
blastx_FNG30_prot	SS1G_07872.1	904082	904261	66	93.33	90.91	n/a	sclerotinia_sclerotiorum Ribosome biogenesis protein Nop10 translation 67 aa
blastx_FNG30_prot	AN8254	904082	904261	67	85.25	91.04	n/a	Aspergillus nidulans AN8254.3 ribosome biogenesis protein Nop10 translation 68 aa
sim4_B0510_genes	BC1G_07804.1	903869	904261	201	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_07872.1	903869	904261	201	86.57	100.00	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.44	901871	903987	273247	100.00	n/a	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.44	904021	907762	273247	100.00	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.10	904075	904264	1547569	82.63	n/a	n/a	n/a
	SS_supercontig_1.10	903862	903906	1547569	95.56	n/a	n/a	n/a
	SS_supercontig_1.10	904075	904264	1547569	82.63	n/a	n/a	n/a
blat_oligo	botrytisP00041625	904198	904257	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:95.48 . min_over_threshold:6.67 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041626	904138	904197	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:146.73 . min_over_threshold:19 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041627	904134	904193	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:140.81 . min_over_threshold:13.73 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041628	904129	904188	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:128 . min_over_threshold:14.64 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041629	904125	904184	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:119.97 . min_over_threshold:13.25 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041630	904121	904180	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:125.07 . min_over_threshold:14.62 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041632	904116	904175	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:94.38 . min_over_threshold:13.3 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041633	904112	904171	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:105.03 . min_over_threshold:10.68 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041634	904103	904162	60	n/a	n/a	n/a	array_gene:BofuT4_P006420_1 . max_over_threshold:106.85 . min_over_threshold:10.03 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00195641	904117	904176	60	n/a	n/a	n/a	array_gene:CL_bt4_SuperContig_2_1_bt4ctg_0081_008_Contig1_v5 . max_over_threshold:112.19 . min_over_threshold:12.13 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00195642	903811	903870	60	n/a	n/a	n/a	array_gene:CL_bt4_SuperContig_2_1_bt4ctg_0081_008_Contig1_v5 . max_over_threshold:57.91 . min_over_threshold:5.02 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00195640	904239	904298	60	n/a	n/a	n/a	array_gene:CL_bt4_SuperContig_2_1_bt4ctg_0081_008_Contig1_v5 . max_over_threshold:123.82 . min_over_threshold:20.63 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1

Current manual annotation

Ortholog