GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4P0000009001

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_08732	46	343	298	n/a	100.00	298	91.61	0.00	1e-156	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	ssl:SS1G_08367	42	342	301	n/a	99.67	302	84.05	4.65	1e-146	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	fgr:FG05284.1	21	343	323	Gaps:5	95.50	333	56.29	13.52	1e-100	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	cpw:CPC735_060780	12	339	328	Gaps:20	95.86	338	57.10	12.04	8e-94	3-hydroxyisobutyrate dehydrogenase putative (EC:1.1.1.31) K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	mgr:MGG_01687	21	343	323	Gaps:11	95.88	340	55.21	12.27	3e-93	MG01687.4 3-hydroxyisobutyrate dehydrogenase putative K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	cim:CIMG_00035	12	339	328	Gaps:20	95.86	338	56.79	12.04	5e-93	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	ncr:NCU06559	1	343	343	Gaps:22	100.00	327	57.19	8.26	6e-91	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	ure:UREG_00163	22	339	318	Gaps:18	90.96	343	55.45	11.86	3e-88	3-hydroxyisobutyrate dehydrogenase K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	afm:AFUA_6G11020	20	339	320	Gaps:22	89.32	365	53.37	11.96	9e-88	3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31) K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
	ang:An08g07890	18	339	322	Gaps:22	90.36	363	52.44	12.50	2e-87	hypothetical protein K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
blastp_uniprot_sprot	sp\|Q54CX6\|3HIDH_DICDI	15	340	326	Gaps:27	95.02	321	39.34	18.03	5e-49	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial OS Dictyostelium discoideum GN hibA PE 3 SV 1
	sp\|Q9V8M5\|3HIDH_DROME	3	339	337	Gaps:20	97.84	324	37.85	17.35	3e-48	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial OS Drosophila melanogaster GN CG15093 PE 2 SV 2
	sp\|Q9XTI0\|3HIDH_CAEEL	35	339	305	Gaps:23	96.99	299	40.69	14.83	4e-47	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial OS Caenorhabditis elegans GN B0250.5 PE 2 SV 1
	sp\|Q99L13\|3HIDH_MOUSE	25	339	315	Gaps:23	88.96	335	39.60	15.44	1e-46	3-hydroxyisobutyrate dehydrogenase mitochondrial OS Mus musculus GN Hibadh PE 2 SV 1
	sp\|P29266\|3HIDH_RAT	25	339	315	Gaps:23	88.96	335	39.26	16.11	1e-45	3-hydroxyisobutyrate dehydrogenase mitochondrial OS Rattus norvegicus GN Hibadh PE 1 SV 3
	sp\|P31937\|3HIDH_HUMAN	25	343	319	Gaps:23	89.88	336	38.41	15.56	4e-45	3-hydroxyisobutyrate dehydrogenase mitochondrial OS Homo sapiens GN HIBADH PE 1 SV 2
	sp\|Q5R5E7\|3HIDH_PONAB	25	343	319	Gaps:23	89.88	336	38.41	15.56	5e-45	3-hydroxyisobutyrate dehydrogenase mitochondrial OS Pongo abelii GN HIBADH PE 2 SV 1
	sp\|Q9SUC0\|3HIDH_ARATH	35	339	305	Gaps:23	86.46	347	36.67	17.67	4e-44	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial OS Arabidopsis thaliana GN At4g20930 PE 2 SV 3
	sp\|Q2HJD7\|3HIDH_BOVIN	25	343	319	Gaps:23	89.88	336	37.42	16.89	5e-44	3-hydroxyisobutyrate dehydrogenase mitochondrial OS Bos taurus GN HIBADH PE 2 SV 1
	sp\|P28811\|MMSB_PSEAE	32	343	312	Gaps:17	99.66	298	35.35	14.48	3e-36	3-hydroxyisobutyrate dehydrogenase OS Pseudomonas aeruginosa GN mmsB PE 2 SV 1
blastp_pdb	2i9p_D	35	339	305	Gaps:23	90.28	319	38.54	15.97	2e-44	mol:protein length:319 3-hydroxyisobutyrate dehydrogenase
	2i9p_C	35	339	305	Gaps:23	90.28	319	38.54	15.97	2e-44	mol:protein length:319 3-hydroxyisobutyrate dehydrogenase
	2i9p_B	35	339	305	Gaps:23	90.28	319	38.54	15.97	2e-44	mol:protein length:319 3-hydroxyisobutyrate dehydrogenase
	2i9p_A	35	339	305	Gaps:23	90.28	319	38.54	15.97	2e-44	mol:protein length:319 3-hydroxyisobutyrate dehydrogenase
	2gf2_D	35	343	309	Gaps:23	98.65	296	38.36	15.75	2e-44	mol:protein length:296 3-hydroxyisobutyrate dehydrogenase
	2gf2_C	35	343	309	Gaps:23	98.65	296	38.36	15.75	2e-44	mol:protein length:296 3-hydroxyisobutyrate dehydrogenase
	2gf2_B	35	343	309	Gaps:23	98.65	296	38.36	15.75	2e-44	mol:protein length:296 3-hydroxyisobutyrate dehydrogenase
	2gf2_A	35	343	309	Gaps:23	98.65	296	38.36	15.75	2e-44	mol:protein length:296 3-hydroxyisobutyrate dehydrogenase
	3obb_A	29	339	311	Gaps:23	98.00	300	35.37	15.65	2e-32	mol:protein length:300 Probable 3-hydroxyisobutyrate dehydrogenase
	3cky_D	30	319	290	Gaps:22	89.04	301	30.60	20.90	2e-23	mol:protein length:301 2-hydroxymethyl glutarate dehydrogenase
rpsblast_cdd	gnl\|CDD\|130753	36	339	304	Gaps:23	99.65	288	47.74	12.89	5e-73	TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
	gnl\|CDD\|32267	35	339	305	Gaps:23	98.60	286	41.13	12.41	5e-57	COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].
	gnl\|CDD\|183197	35	338	304	Gaps:46	94.59	296	35.36	17.14	6e-39	PRK11559 garR tartronate semialdehyde reductase Provisional.
	gnl\|CDD\|146202	35	208	174	Gaps:22	96.93	163	44.30	13.92	5e-36	pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
	gnl\|CDD\|130569	35	339	305	Gaps:30	96.56	291	32.74	19.22	2e-35	TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product 3-phosphoglycerate is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde the substrate of this enzyme may also come from other pathways such as D-glucarate catabolism.
	gnl\|CDD\|185358	36	336	301	Gaps:39	93.92	296	35.25	15.47	1e-31	PRK15461 PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase Provisional.
	gnl\|CDD\|185019	35	320	286	Gaps:40	89.73	292	32.44	20.61	4e-22	PRK15059 PRK15059 tartronate semialdehyde reductase Provisional.
	gnl\|CDD\|178449	35	318	284	Gaps:74	38.17	1378	28.14	21.48	1e-20	PLN02858 PLN02858 fructose-bisphosphate aldolase.
	gnl\|CDD\|183555	33	221	189	Gaps:34	58.53	299	32.57	16.00	2e-12	PRK12490 PRK12490 6-phosphogluconate dehydrogenase-like protein Reviewed.
	gnl\|CDD\|31226	33	237	205	Gaps:28	63.67	300	30.37	15.71	2e-10	COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism].
rpsblast_kog	gnl\|CDD\|35630	13	337	325	Gaps:29	92.35	327	41.06	16.89	4e-56	KOG0409 KOG0409 KOG0409 Predicted dehydrogenase [General function prediction only].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ADA11YI10CM1	103718	104287	570	100.00	100.00	n/a	B0510 mycelium - carbon sources library
	PD0AEA5YP07CM1	103007	103920	636	100.00	100.00	n/a	BT4 appressoria on teflon library
	PD0AEA10YC14CM1	103601	103854	254	99.61	100.00	n/a	BT4 appressoria on teflon library
	YCKA_555043	102592	103268	623	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	B4BC_116_241_F11	102575	103371	743	99.46	100.00	n/a	B0510 Germinated spores on bean leaves library
	PD0ABA8YC10FM1	103003	103941	661	99.85	100.00	n/a	BT4 young mycelium library
	PD0ABA10YG06FM1	102946	103901	678	100.00	100.00	n/a	BT4 young mycelium library
	PD0ACA25YG04FM1	102576	103311	682	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0AEA5YP07CM1	103007	103920	636	100.00	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA5YD05CM1	102999	103912	636	100.00	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA13YH12CM1	102998	103837	562	100.00	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA15YI04CM1	102999	103807	532	99.44	100.00	n/a	BT4 appressoria on teflon library
	B2BC_045_121_D04	104053	104364	312	100.00	100.00	n/a	B0510 Spores suspension on bean library
	PD0ABA8YC10NM1r	103256	104339	860	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA10YG06NM1r	103242	104330	865	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA22YK02FM1	103692	104360	669	99.70	100.00	n/a	BT4 young mycelium library
	PD0ACA6YG13FM1	104015	104363	349	100.00	100.00	n/a	BT4 mycelium - pH stress library
	YCIA_533561	82711	116370	223	91.95	39.01	n/a	Botrytis cinerea HortResearch libraries
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_0_1_bt4ctg_0005_010.Contig1_v5	102575	104364	1512	100.00	100.00	n/a	all_lib_clone_nr:13
sim4_Ss_allest	G787P526FA10.T0	103611	104322	831	87.08	85.68	n/a	Ss ESTs grown as developing apothecia
	G787P526RA10.T0	102999	103954	757	86.54	75.56	n/a	Ss ESTs grown as developing apothecia
	G787P526FA10.T0	103611	104322	831	87.08	85.68	n/a	Ss ESTs grown as developing apothecia
blastx_uniprot_sprot	Q9XTI0	103593	104303	299	44.21	77.93	n/a	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial - Caenorhabditis elegans
	Q9V8M5	103593	104294	324	45.58	69.75	n/a	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Drosophila melanogaster (Fruit fly)
	Q99L13	103689	104315	335	48.31	61.79	n/a	3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Mus musculus (Mouse)
	P29266	103689	104315	335	48.31	61.79	n/a	3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Rattus norvegicus (Rat)
	Q5R5E7	103689	104315	336	47.34	61.61	n/a	3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Pongo pygmaeus (Orangutan)
	P31937	103689	104315	336	47.34	61.61	n/a	3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Homo sapiens (Human)
	Q2HJD7	103689	104315	336	46.86	61.61	n/a	3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Bos taurus (Bovine)
	Q9SUC0	103584	104300	347	40.82	70.61	n/a	Probable 3-hydroxyisobutyrate dehydrogenase mitochondrial precursor - Arabidopsis thaliana (Mouse-ear cress)
	P28811	103584	104315	298	42.08	80.54	n/a	3-hydroxyisobutyrate dehydrogenase - Pseudomonas aeruginosa
	P63935	103584	104240	294	41.23	71.77	n/a	Probable 3-hydroxyisobutyrate dehydrogenase - Mycobacterium tuberculosis
blastx_uniprot_trembl	Q0UHP4	103578	104315	298	64.63	82.55	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q9C1L3	103584	104315	338	69.67	72.19	n/a	Putative 3-hydroxyisobutyrate dehydrogenase G6G8.5 - Neurospora crassa
	Q2H235	103584	104315	346	66.93	72.54	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A4RJY0	103584	104315	340	67.77	71.18	n/a	3-hydroxyisobutyrate dehydrogenase putative - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q1K8F0	103614	104315	327	70.51	71.56	n/a	Putative uncharacterized protein - Neurospora crassa
	Q1EBM8	103584	104303	338	68.91	70.41	n/a	Putative uncharacterized protein - Coccidioides immitis
	A6QUN7	103584	104303	296	67.50	81.08	n/a	Putative uncharacterized protein - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	A1CTY8	103542	104303	309	60.39	82.52	n/a	3-hydroxyisobutyrate dehydrogenase - Aspergillus clavatus
blastx_FNG30_prot	SS1G_08367.1	103584	104312	302	93.00	80.46	n/a	sclerotinia_sclerotiorum hypothetical protein translation 303 aa
	FG05284.1	103584	104315	333	69.46	71.77	n/a	fusarium_graminearum hypothetical protein 334 aa
	SNU08720.1	103584	104315	341	64.75	71.55	n/a	Stagonospora nodorum hypothetical protein translation
	jgi:Triree:36302	103584	104315	332	67.78	71.99	n/a	Trichoderma reesei
	NCU06559.2	103584	104315	338	69.67	72.19	n/a	Neurospora crassa hypothetical protein AF309689 putative 3-hydroxyisobutyrate dehydrogenase G6G8.5 [Neurospora crassa] translation 339 aa
	CHG04161.1	103584	104315	346	66.93	72.54	n/a	Chaetomium globosum hypothetical protein translation 347 aa
	MGG_01687.5	103584	104315	340	67.77	71.18	n/a	magnaporthe_grisea 3-hydroxyisobutyrate dehydrogenase putative translation 341 aa
	CIMG_00035.2	103584	104303	338	68.91	70.41	n/a	Coccidioides immitis hypothetical protein translation 339 aa
	AO090023000518	103593	104303	363	64.41	65.01	n/a	Aspergillus oryzae predicted dehydrogenase
	gi:70992279:ref:XP_750988.1:	103542	104303	365	60.00	69.86	n/a	Aspergillus fumigatus Af293 3-hydroxyisobutyrate dehydrogenase
sim4_B0510_genes	BC1G_08732.1	103198	104318	897	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_08367.1	103188	104318	909	86.47	100.00	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.58	102541	107643	255615	99.98	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.11	103589	104322	1419214	86.78	n/a	n/a	n/a
	SS_supercontig_1.11	103412	103539	1419214	98.44	n/a	n/a	n/a
	SS_supercontig_1.11	103169	103361	1419214	86.01	n/a	n/a	n/a
	SS_supercontig_1.11	102994	103138	1419214	82.07	n/a	n/a	n/a
	SS_supercontig_1.11	103589	104322	1419214	86.78	n/a	n/a	n/a
blat_oligo	botrytisP00036841	103030	103089	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:39.01 . min_over_threshold:2.67 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036842	103349	103632	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:93.26 . min_over_threshold:5.43 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036843	103705	103764	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:23.5 . min_over_threshold:1.29 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036845	103794	103853	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:35.55 . min_over_threshold:1.05 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036846	103876	103935	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:66.69 . min_over_threshold:2.73 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036847	103999	104058	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:44.58 . min_over_threshold:1.77 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036848	104048	104107	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:35.99 . min_over_threshold:1.63 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036849	104102	104161	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:24.6 . min_over_threshold:1.06 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00036850	104183	104242	60	n/a	n/a	n/a	array_gene:BofuT4_P000480_1 . max_over_threshold:12.5 . min_over_threshold:0.63 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog

Link to edition