GRS - Genome Report System

Botrytis cinerea B0510 GRS

Functional annotation

BC1G_11353.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_11353	1	1476	1476	n/a	100.00	1476	93.83	0.00	0.0	hypothetical protein
	ssl:SS1G_10991	1	1476	1476	Gaps:3	99.66	1484	85.60	4.73	0.0	hypothetical protein
	fgr:FG06364.1	1	1392	1392	Gaps:86	90.35	1388	46.09	20.57	0.0	hypothetical protein
	pan:PODANSg9267	1	1402	1402	Gaps:111	92.26	1434	43.69	19.95	0.0	hypothetical protein
	ncr:NCU02411	1	1335	1335	Gaps:129	82.49	1491	43.82	20.24	0.0	hypothetical protein
	mgr:MGG_03548	4	1399	1396	Gaps:167	89.54	1645	42.29	19.76	0.0	MG03548.4 hypothetical protein
	act:ACLA_037290	5	1380	1376	Gaps:241	97.88	1226	41.00	23.75	1e-163	spindle-pole body protein (Pcp1) putative
	nfi:NFIA_067770	9	1395	1387	Gaps:134	94.14	1229	38.81	22.99	1e-161	spindle-pole body protein (Pcp1) putative
	aor:AO090005001297	6	1380	1375	Gaps:135	95.85	1229	38.71	22.24	1e-154	dystonin GAS (Growth-arrest-specific protein) and related proteins
	afm:AFUA_3G09370	9	1395	1387	Gaps:154	92.60	1271	38.23	23.02	1e-151	spindle-pole body protein (Pcp1)
blastp_uniprot_sprot	sp\|Q92351\|PCP1_SCHPO	79	1374	1296	Gaps:45	29.88	1208	27.70	23.82	1e-11	Spindle pole body protein pcp1 OS Schizosaccharomyces pombe GN pcp1 PE 1 SV 1
	sp\|O60039\|APSB_EMENI	178	298	121	Gaps:17	11.99	1051	39.68	19.05	4e-09	Anucleate primary sterigmata protein B OS Emericella nidulans GN apsB PE 4 SV 2
	sp\|Q9WUJ3\|MYOME_RAT	187	455	269	Gaps:59	11.45	2324	32.71	17.29	6e-07	Myomegalin OS Rattus norvegicus GN Pde4dip PE 1 SV 1
	sp\|Q9BE52\|CK5P2_MACFA	129	252	124	Gaps:15	14.97	862	34.88	20.93	8e-07	CDK5 regulatory subunit-associated protein 2 OS Macaca fascicularis GN CDK5RAP2 PE 2 SV 1
	sp\|Q8K389\|CK5P2_MOUSE	179	252	74	n/a	4.06	1822	43.24	24.32	9e-07	CDK5 regulatory subunit-associated protein 2 OS Mus musculus GN Cdk5rap2 PE 2 SV 3
	sp\|O94488\|MBO1_SCHPO	173	248	76	n/a	6.82	1115	39.47	21.05	1e-06	Microtubule organizer protein 1 OS Schizosaccharomyces pombe GN mbo1 PE 1 SV 1
	sp\|Q19UN5\|CK5P2_PANTR	163	252	90	Gaps:8	5.18	1893	37.76	21.43	1e-06	CDK5 regulatory subunit-associated protein 2 OS Pan troglodytes GN CDK5RAP2 PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|162739	180	1134	955	Gaps:435	73.96	1179	60.78	22.02	5e-28	TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
	gnl\|CDD\|31389	176	1281	1106	Gaps:239	75.24	1163	65.60	21.83	8e-23	COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
	gnl\|CDD\|116599	179	252	74	n/a	98.67	75	62.16	16.22	6e-18	pfam07989 Microtub_assoc Microtubule associated. This presumed domain has been identified in two microtubule associated proteins in Schizosaccharomyces pombe Mto1 and Pcp1. Mto1 has been identified in association with spindle pole body and non-spindle pole body microtubules. The pericentrin homolog Pcp1 is also associated with the fungal centrosome or spindle pole body (SPB).
	gnl\|CDD\|151055	1299	1375	77	Gaps:1	100.00	78	38.46	16.67	7e-17	pfam10495 PACT_coil_coil Pericentrin-AKAP-450 domain of centrosomal targeting protein. This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
	gnl\|CDD\|167333	229	1016	788	Gaps:164	62.50	880	50.18	24.00	2e-15	PRK02224 PRK02224 chromosome segregation protein Provisional.
	gnl\|CDD\|152563	180	1208	1029	Gaps:342	56.80	1192	52.88	23.04	5e-13	pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
	gnl\|CDD\|162740	179	1174	996	Gaps:318	64.18	1164	56.49	27.31	3e-12	TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
	gnl\|CDD\|30768	281	1123	843	Gaps:72	69.16	908	44.75	28.50	4e-12	COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].
	gnl\|CDD\|100796	386	1133	748	Gaps:155	63.91	895	26.57	29.37	7e-12	PRK01156 PRK01156 chromosome segregation protein Provisional.
	gnl\|CDD\|167637	176	1239	1064	Gaps:279	72.72	887	54.57	26.36	1e-11	PRK03918 PRK03918 chromosome segregation protein Provisional.
rpsblast_kog	gnl\|CDD\|35383	177	1322	1146	Gaps:335	56.68	1930	52.01	28.52	8e-35	KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
	gnl\|CDD\|36180	222	1280	1059	Gaps:234	72.10	1294	39.01	28.08	3e-21	KOG0962 KOG0962 KOG0962 DNA repair protein RAD50 ABC-type ATPase/SMC superfamily [Replication recombination and repair].
	gnl\|CDD\|39873	172	1275	1104	Gaps:173	82.93	1822	31.30	27.66	4e-14	KOG4674 KOG4674 KOG4674 Uncharacterized conserved coiled-coil protein [Function unknown].
	gnl\|CDD\|35832	181	1233	1053	Gaps:40	42.14	1317	29.19	28.11	5e-12	KOG0612 KOG0612 KOG0612 Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms].
	gnl\|CDD\|36194	396	1238	843	Gaps:131	51.78	1265	28.55	23.66	7e-12	KOG0976 KOG0976 KOG0976 Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms].
	gnl\|CDD\|36212	115	889	775	Gaps:172	33.05	1758	33.56	23.58	3e-10	KOG0994 KOG0994 KOG0994 Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures].
	gnl\|CDD\|36151	221	1017	797	Gaps:115	59.63	1174	37.00	31.71	1e-09	KOG0933 KOG0933 KOG0933 Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
	gnl\|CDD\|36189	628	1011	384	Gaps:39	29.85	1243	19.95	22.64	6e-09	KOG0971 KOG0971 KOG0971 Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control cell division chromosome partitioning Cytoskeleton].
	gnl\|CDD\|35464	343	862	520	Gaps:45	47.17	1041	16.90	21.79	8e-09	KOG0243 KOG0243 KOG0243 Kinesin-like protein [Cytoskeleton].
	gnl\|CDD\|36182	260	991	732	Gaps:130	63.75	1200	23.92	24.71	1e-08	KOG0964 KOG0964 KOG0964 Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin subunit SMC3) [Cell cycle control cell division chromosome partitioning].

Other analysis

Functional Gbrowse

Ortholog