GRS - Genome Report System

Botrytis cinerea B0510 GRS

Functional annotation

BC1G_02878.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_02878	1	845	845	n/a	100.00	845	97.87	0.00	0.0	hypothetical protein K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	ssl:SS1G_07704	1	845	845	Gaps:2	100.00	847	90.20	3.54	0.0	hypothetical protein K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	fgr:FG07280.1	1	844	844	Gaps:28	94.50	872	70.02	10.32	0.0	hypothetical protein K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	nfi:NFIA_038790	1	842	842	Gaps:25	99.03	829	68.57	10.60	0.0	TFIIH complex helicase Ssl2 putative K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	afv:AFLA_006070	1	842	842	Gaps:33	98.91	824	68.47	11.41	0.0	TFIIH complex helicase Ssl2 putative K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	aor:AO090102000536	1	842	842	Gaps:33	98.91	824	68.47	11.41	0.0	RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH 3'-5' helicase subunit SSL2 K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	act:ACLA_001850	1	842	842	Gaps:35	99.03	823	69.33	11.04	0.0	TFIIH complex helicase Ssl2 putative K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	ani:AN8201.2	1	842	842	Gaps:21	99.04	833	67.64	11.52	0.0	hypothetical protein K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	afm:AFUA_5G03320	70	842	773	Gaps:10	92.41	830	70.40	10.82	0.0	TFIIH complex helicase Ssl2 K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
	cim:CIMG_06527	1	842	842	Gaps:31	99.16	832	67.52	12.24	0.0	hypothetical protein K10843 DNA excision repair protein ERCC-3 [EC:3.6.1.-]
blastp_uniprot_sprot	sp\|Q00578\|RAD25_YEAST	85	823	739	Gaps:15	86.36	843	64.29	14.15	0.0	DNA repair helicase RAD25 OS Saccharomyces cerevisiae GN RAD25 PE 1 SV 1
	sp\|O13768\|ERCC3_SCHPO	93	833	741	Gaps:17	90.80	804	64.93	14.25	0.0	Probable DNA repair helicase ercc3 OS Schizosaccharomyces pombe GN ercc3 PE 1 SV 1
	sp\|O00835\|ERCC3_DICDI	55	811	757	Gaps:38	93.12	800	53.56	16.51	0.0	TFIIH basal transcription factor complex helicase repB subunit OS Dictyostelium discoideum GN repB PE 2 SV 1
	sp\|Q1RMT1\|ERCC3_BOVIN	81	823	743	Gaps:35	93.86	782	53.68	18.26	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Bos taurus GN ERCC3 PE 2 SV 1
	sp\|Q60HG1\|ERCC3_MACFA	81	818	738	Gaps:31	93.22	782	53.22	18.24	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Macaca fascicularis GN ERCC3 PE 2 SV 1
	sp\|Q4G005\|ERCC3_RAT	81	818	738	Gaps:31	93.22	782	52.54	19.07	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Rattus norvegicus GN Ercc3 PE 2 SV 1
	sp\|P19447\|ERCC3_HUMAN	81	818	738	Gaps:31	93.22	782	53.09	18.24	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Homo sapiens GN ERCC3 PE 1 SV 1
	sp\|P49135\|ERCC3_MOUSE	81	823	743	Gaps:22	93.87	783	51.97	19.05	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Mus musculus GN Ercc3 PE 2 SV 1
	sp\|Q5RA62\|ERCC3_PONAB	81	818	738	Gaps:31	93.22	782	53.09	18.24	0.0	TFIIH basal transcription factor complex helicase XPB subunit OS Pongo abelii GN ERCC3 PE 2 SV 1
	sp\|Q02870\|ERCC3_DROME	57	834	778	Gaps:51	95.11	798	52.17	15.94	0.0	DNA excision repair protein haywire OS Drosophila melanogaster GN hay PE 2 SV 2
blastp_pdb	2fwr_D	356	717	362	Gaps:74	78.81	472	28.49	21.24	5e-23	mol:protein length:472 DNA repair protein RAD25
	2fwr_C	356	717	362	Gaps:74	78.81	472	28.49	21.24	5e-23	mol:protein length:472 DNA repair protein RAD25
	2fwr_B	356	717	362	Gaps:74	78.81	472	28.49	21.24	5e-23	mol:protein length:472 DNA repair protein RAD25
	2fwr_A	356	717	362	Gaps:74	78.81	472	28.49	21.24	5e-23	mol:protein length:472 DNA repair protein RAD25
	2fz4_A	356	519	164	Gaps:23	60.34	237	31.47	23.78	1e-08	mol:protein length:237 DNA repair protein RAD25
rpsblast_cdd	gnl\|CDD\|161952	100	833	734	Gaps:14	100.00	732	59.43	14.89	0.0	TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
	gnl\|CDD\|31261	331	754	424	Gaps:38	97.29	442	32.09	17.67	8e-77	COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication recombination and repair].
	gnl\|CDD\|128763	348	523	176	Gaps:26	90.55	201	24.18	15.93	6e-16	smart00487 DEXDc DEAD-like helicases superfamily.
	gnl\|CDD\|28927	374	511	138	Gaps:22	100.00	144	19.44	14.58	1e-09	cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region..
	gnl\|CDD\|28960	578	690	113	Gaps:7	88.55	131	25.86	19.83	3e-09	cd00079 HELICc Helicase superfamily c-terminal domain associated with DEXDc- DEAD- and DEAH-box proteins yeast initiation factor 4A Ski2p and Hepatitis C virus NS3 helicases this domain is found in a wide variety of helicases and helicase related proteins may not be an autonomously folding unit but an integral part of the helicase 4 helicase superfamilies at present according to the organization of their signature motifs all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA unwinding the duplex in the process.
	gnl\|CDD\|144016	619	688	70	Gaps:2	87.18	78	30.88	17.65	8e-09	pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit but an integral part of the helicase.
	gnl\|CDD\|128766	619	688	70	Gaps:2	82.93	82	35.29	11.76	8e-08	smart00490 HELICc helicase superfamily c-terminal domain.
	gnl\|CDD\|143942	383	526	144	Gaps:29	49.15	295	23.45	22.07	5e-07	pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).
rpsblast_kog	gnl\|CDD\|36339	38	840	803	Gaps:28	99.87	776	57.81	16.00	0.0	KOG1123 KOG1123 KOG1123 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH 3'-5' helicase subunit SSL2 [Transcription Replication recombination and repair].

Other analysis

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Ortholog