GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4P9000001001

Sequence

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_12815	1	910	910	Gaps:18	100.00	922	90.35	2.93	0.0	hypothetical protein K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	pan:PODANSg09826	46	910	865	Gaps:5	91.04	949	68.40	12.27	0.0	hypothetical protein K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	ncr:NCU00793	1	909	909	Gaps:9	97.74	929	66.08	11.34	0.0	similar to alpha alpha-trehalose phosphate synthase subunit TPS3 K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	fgr:FG05697.1	46	909	864	Gaps:14	91.53	933	68.03	11.94	0.0	hypothetical protein K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	act:ACLA_005640	1	910	910	Gaps:22	99.68	927	56.49	14.18	0.0	alpha alpha-trehalose phosphate synthase subunit TPS3 putative K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	ure:UREG_07780	56	910	855	Gaps:6	91.68	937	58.91	16.07	0.0	hypothetical protein K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	cim:CIMG_07507	93	910	818	Gaps:11	97.50	840	60.32	16.24	0.0	hypothetical protein K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	aor:AO090026000820	49	910	862	Gaps:26	94.40	928	57.76	15.18	0.0	trehalose-6-phosphate synthase component TPS1 and related subunits K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	nfi:NFIA_024900	61	910	850	Gaps:19	92.88	927	58.30	14.29	0.0	alpha alpha-trehalose phosphate synthase subunit TPS3 putative K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
	afm:AFUA_7G03940	48	900	853	Gaps:32	94.12	919	58.38	13.99	0.0	alpha alpha-trehalose phosphate synthase subunit TPS3 putative (EC:2.4.1.15) K00697 alpha alpha-trehalose-phosphate synthase (UDP-forming) [EC:2.4.1.15]
blastp_uniprot_sprot	sp\|O14081\|TPSX_SCHPO	160	906	747	Gaps:44	78.92	944	44.03	20.27	0.0	Putative alpha alpha-trehalose-phosphate synthase [UDP-forming] 106 kDa subunit OS Schizosaccharomyces pombe GN SPACUNK4.16c PE 1 SV 1
	sp\|Q9UUI7\|TPSY_SCHPO	141	907	767	Gaps:32	84.51	891	43.43	19.12	1e-176	Putative alpha alpha-trehalose-phosphate synthase [UDP-forming] 100 kDa subunit OS Schizosaccharomyces pombe GN SPAC22F8.05 PE 1 SV 1
	sp\|P38427\|TSL1_YEAST	147	823	677	Gaps:39	59.56	1098	42.20	19.57	1e-147	Trehalose synthase complex regulatory subunit TSL1 OS Saccharomyces cerevisiae GN TSL1 PE 1 SV 1
	sp\|P38426\|TPS3_YEAST	157	794	638	Gaps:30	58.06	1054	42.65	18.63	1e-140	Trehalose synthase complex regulatory subunit TPS3 OS Saccharomyces cerevisiae GN TPS3 PE 1 SV 3
	sp\|Q54K57\|TPSA_DICDI	159	853	695	Gaps:51	89.77	733	36.63	21.28	1e-114	Alpha alpha-trehalose-phosphate synthase [UDP-forming] A OS Dictyostelium discoideum GN tpsA PE 2 SV 1
	sp\|Q54NU9\|TPSB_DICDI	176	862	687	Gaps:45	84.56	790	36.38	20.21	1e-111	Alpha alpha-trehalose-phosphate synthase [UDP-forming] B OS Dictyostelium discoideum GN tpsB PE 3 SV 1
	sp\|Q9FZ57\|TPS2_ARATH	190	910	721	Gaps:47	87.83	822	34.35	19.53	1e-104	Probable alpha alpha-trehalose-phosphate synthase [UDP-forming] 2 OS Arabidopsis thaliana GN TPS2 PE 3 SV 1
	sp\|Q9LMI0\|TPS7_ARATH	168	910	743	Gaps:72	90.36	851	30.95	21.07	1e-101	Probable alpha alpha-trehalose-phosphate synthase [UDP-forming] 7 OS Arabidopsis thaliana GN TPS7 PE 1 SV 1
	sp\|Q9SYM4\|TPS1_ARATH	193	859	667	Gaps:36	71.02	942	34.08	17.79	1e-100	Alpha alpha-trehalose-phosphate synthase [UDP-forming] 1 OS Arabidopsis thaliana GN TPS1 PE 1 SV 1
	sp\|O14145\|TPS2_SCHPO	212	861	650	Gaps:41	73.62	849	36.00	20.96	2e-99	Trehalose-phosphatase OS Schizosaccharomyces pombe GN tps2 PE 2 SV 1
blastp_pdb	1uqu_B	173	636	464	Gaps:28	94.19	482	27.53	21.37	2e-44	mol:protein length:482 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
	1uqu_A	173	636	464	Gaps:28	94.19	482	27.53	21.37	2e-44	mol:protein length:482 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
	1uqt_B	173	636	464	Gaps:28	94.19	482	27.53	21.37	2e-44	mol:protein length:482 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
	1uqt_A	173	636	464	Gaps:28	94.19	482	27.53	21.37	2e-44	mol:protein length:482 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
	2wtx_D	173	635	463	Gaps:28	95.57	474	27.59	21.19	3e-44	mol:protein length:474 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UD
	2wtx_C	173	635	463	Gaps:28	95.57	474	27.59	21.19	3e-44	mol:protein length:474 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UD
	2wtx_B	173	635	463	Gaps:28	95.57	474	27.59	21.19	3e-44	mol:protein length:474 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UD
	2wtx_A	173	635	463	Gaps:28	95.57	474	27.59	21.19	3e-44	mol:protein length:474 ALPHA ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UD
	1gz5_D	173	619	447	Gaps:24	94.96	456	28.18	20.79	3e-43	mol:protein length:456 ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
	1gz5_C	173	619	447	Gaps:24	94.96	456	28.18	20.79	3e-43	mol:protein length:456 ALPHA-TREHALOSE-PHOSPHATE SYNTHASE
rpsblast_cdd	gnl\|CDD\|99963	168	617	450	Gaps:22	95.22	460	42.47	17.35	1e-159	cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha alpha-1 1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect plant and microbial cells. Its production is often associated with a variety of stress conditions including desiccation dehydration heat cold and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain..
	gnl\|CDD\|144539	152	616	465	Gaps:21	97.02	470	41.67	20.18	1e-152	pfam00982 Glyco_transf_20 Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex .
	gnl\|CDD\|184712	157	907	751	Gaps:55	97.80	726	34.93	19.58	1e-150	PRK14501 PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB Provisional.
	gnl\|CDD\|30729	171	616	446	Gaps:24	89.71	486	46.33	15.14	1e-127	COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism].
	gnl\|CDD\|178615	173	907	735	Gaps:71	93.60	797	33.51	19.44	1e-122	PLN03063 PLN03063 alpha alpha-trehalose-phosphate synthase (UDP-forming) Provisional.
	gnl\|CDD\|178616	169	859	691	Gaps:64	73.77	934	35.27	18.29	1e-114	PLN03064 PLN03064 alpha alpha-trehalose-phosphate synthase (UDP-forming) Provisional.
	gnl\|CDD\|162840	173	617	445	Gaps:22	94.96	456	37.18	19.17	1e-100	TIGR02400 trehalose_OtsA alpha alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key penultimate step in biosynthesis of trehalose a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species) shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway the significance of OtsA in this species is unclear (see Wolf et al. PubMed:12890033).
	gnl\|CDD\|177855	177	861	685	Gaps:55	82.90	854	31.64	20.76	1e-100	PLN02205 PLN02205 alpha alpha-trehalose-phosphate synthase [UDP-forming].
	gnl\|CDD\|131451	186	613	428	Gaps:55	90.55	487	28.57	18.59	1e-53	TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha alpha-trehalose-phosphate synthase likewise involved in osmolyte biosynthesis of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
	gnl\|CDD\|182249	193	635	443	Gaps:48	91.35	474	30.25	19.86	3e-50	PRK10117 PRK10117 trehalose-6-phosphate synthase Provisional.
rpsblast_kog	gnl\|CDD\|36268	190	905	716	Gaps:44	94.26	732	40.43	17.54	1e-162	KOG1050 KOG1050 KOG1050 Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism].

Other analysis

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCOA_549885	32682	33452	661	99.70	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_549880	32682	33388	597	99.83	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_574089	33685	34284	548	99.82	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_567724	32537	33154	509	97.64	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_574145	33685	33778	95	97.89	100.00	n/a	Botrytis cinerea HortResearch libraries
	AL112416	33287	34150	760	94.61	100.00	n/a	BT4 Mycelium - nitrate starvation library
	YCHA_544983	30577	31483	500	99.79	97.40	n/a	Botrytis cinerea HortResearch libraries
	YCNA_551270	30323	31173	695	98.99	100.00	n/a	Botrytis cinerea HortResearch libraries
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	G787P589RF4.T0	30981	31813	650	83.37	65.69	n/a	Ss ESTs grown as developing apothecia
sim4_Ss_allest	G787P589FF4.T0	30981	31813	650	83.37	65.69	n/a	Ss ESTs grown as developing apothecia
blastx_uniprot_sprot	Q9UUI7	31690	34056	891	42.22	80.81	n/a	Putative alpha alpha-trehalose-phosphate synthase [UDP-forming] 100 kDa subunit - Schizosaccharomyces pombe (Fission yeast)
	O14081	31789	33602	944	45.47	60.81	n/a	Putative alpha alpha-trehalose-phosphate synthase [UDP-forming] 106 kDa subunit - Schizosaccharomyces pombe (Fission yeast)
	P38426	31939	34041	1054	43.41	58.35	n/a	Trehalose synthase complex regulatory subunit TPS3 - Saccharomyces cerevisiae (Baker's yeast)
	P38427	31909	34011	1098	43.04	56.28	n/a	Trehalose synthase complex regulatory subunit TSL1 - Saccharomyces cerevisiae (Baker's yeast)
	P31688	32176	33951	896	38.06	59.82	n/a	Trehalose-phosphatase - Saccharomyces cerevisiae (Baker's yeast)
	P78875	32125	34014	817	35.69	67.56	n/a	Trehalose-phosphatase - Schizosaccharomyces pombe (Fission yeast)
	O14145	32104	34047	849	37.18	68.43	n/a	Trehalose-phosphatase - Schizosaccharomyces pombe (Fission yeast)
	P40387	31984	33479	513	37.80	88.69	n/a	Alpha alpha-trehalose-phosphate synthase [UDP-forming] - Schizosaccharomyces pombe (Fission yeast)
	Q00764	31984	33428	495	37.61	88.08	n/a	Alpha alpha-trehalose-phosphate synthase [UDP-forming] 56 kDa subunit - Saccharomyces cerevisiae (Baker's yeast)
	Q00075	31984	33491	517	36.92	88.01	n/a	Alpha alpha-trehalose-phosphate synthase [UDP-forming] 1 - Aspergillus niger
blastx_uniprot_trembl	A8U3R4	31456	34378	922	71.19	95.99	n/a	Trehalose phosphate synthase - Erysiphe graminis subsp. hordei (Grass mildew) (Blumeria graminis subsp. hordei)
	Q7SFT8	31456	34463	929	67.89	96.88	n/a	Putative uncharacterized protein - Neurospora crassa
	Q2HEX5	31456	34466	961	65.79	95.21	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q1DQA6	31750	34378	840	60.97	96.07	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q4WG65	31456	34390	919	56.88	98.91	n/a	Alpha alpha-trehalose phosphate synthase subunit TPS3 putative - Aspergillus fumigatus (Sartorya fumigata)
	Q2UDZ5	31456	34378	928	57.40	97.63	n/a	Trehalose-6-phosphate synthase component TPS1 and related subunits - Aspergillus oryzae
	A1CD81	31507	34378	927	57.36	97.41	n/a	Alpha alpha-trehalose phosphate synthase subunit TPS3 putative - Aspergillus clavatus
	A1DC58	31456	34378	927	57.13	97.63	n/a	Alpha alpha-trehalose phosphate synthase subunit TPS3 putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q0CPV7	31456	34378	927	56.94	97.95	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
blastx_FNG30_prot	SS1G_12815.1	31456	34466	922	94.42	99.13	n/a	sclerotinia_sclerotiorum hypothetical protein translation 923 aa
	NCU00793.2	31456	34463	909	67.89	99.01	n/a	Neurospora crassa hypothetical protein translation 910 aa
	jgi:Triree:42634	31456	34378	905	67.83	97.90	n/a	Trichoderma reesei
	FG05697.1	31456	34378	933	66.08	97.96	n/a	fusarium_graminearum hypothetical protein 934 aa
	CHG01229.1	31456	34466	961	65.79	95.21	n/a	Chaetomium globosum hypothetical protein translation 962 aa
	MGG_14118.5	31456	34375	985	66.97	90.66	n/a	magnaporthe_grisea hypothetical protein translation 986 aa
	CIMG_07507.2	31750	34378	840	60.97	96.07	n/a	Coccidioides immitis hypothetical protein translation 841 aa
	gi:70987272:ref:XP_749114.1:	31456	34390	919	56.88	98.91	n/a	Aspergillus fumigatus Af293 alphaalpha-trehalose phosphate synthase subunit TPS3
	AO090026000820	31456	34378	928	57.40	97.63	n/a	Aspergillus oryzae trehalose-6-phosphate synthase component TPS1 and related subunits
	AN10533	31456	34378	930	55.53	97.20	n/a	Aspergillus nidulans AN10533.3 conserved hypothetical protein translation 931 aa
sim4_B0510_genes	BC1G_08269.1	31171	32835	1404	99.64	100.00	n/a	n/a
sim4_B0510_genes	BC1G_08269.1	31171	32835	1404	99.64	100.00	n/a	n/a
sim4_SS_genes	SS1G_12815.1	31171	34469	2769	87.11	98.09	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.45	31418	32933	261568	98.62	n/a	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.45	30614	31404	261568	99.87	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.22	31748	32794	755171	87.39	n/a	n/a	n/a
	SS_supercontig_1.22	32925	33608	755171	87.13	n/a	n/a	n/a
	SS_supercontig_1.22	33648	34021	755171	88.24	n/a	n/a	n/a
	SS_supercontig_1.22	34105	34379	755171	88.36	n/a	n/a	n/a
	SS_supercontig_1.22	34426	34479	755171	92.59	n/a	n/a	n/a
blat_oligo	botrytisP00047142	32733	32902	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:67.27 . min_over_threshold:7.92 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047143	32901	32960	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:103.87 . min_over_threshold:7.02 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047144	32978	33037	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:87.59 . min_over_threshold:8.18 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047145	33086	33145	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:34.99 . min_over_threshold:2.17 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047146	33360	33419	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:72.99 . min_over_threshold:8.98 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047147	33421	33480	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:88.89 . min_over_threshold:9.31 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047148	33480	33539	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:64.57 . min_over_threshold:5.24 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047149	33557	33665	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:123.27 . min_over_threshold:25.06 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00047151	33954	34013	60	n/a	n/a	n/a	array_gene:BofuT4_P013840_1 . max_over_threshold:102.04 . min_over_threshold:10.93 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Analysis

Type

Start

End

Ortholog

Current manual annotation

Functional edition

Gene ID:

Gene Name:

Synonym:

PMID:

Functional validation status

Not validate Validate

Evidence Code :

Gene function:

Comments:

Gene Ontology:

Search ontology by term or ID (for this enter only number) :

Gene prediction at gene locus

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