GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4P2000069001

Sequence

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_07742	1	325	325	Gaps:1	100.00	324	92.28	1.23	1e-170	hypothetical protein
	fgr:FG01175.1	1	297	297	n/a	93.10	319	74.07	11.45	1e-128	hypothetical protein
	mgr:MGG_10382	1	297	297	Gaps:5	84.83	356	65.23	17.55	1e-114	MG10382.4 ribosome biogenesis protein putative
	ncr:NCU08595	1	297	297	Gaps:6	88.86	341	64.69	14.85	1e-112	hypothetical protein
	pan:PODANSg5774	6	297	292	Gaps:5	78.99	376	63.64	17.51	1e-109	hypothetical protein
	pno:SNOG_04093	1	297	297	Gaps:1	89.70	330	59.12	17.91	3e-99	hypothetical protein
	tml:GSTUM_00011560001	1	295	295	Gaps:3	91.54	319	58.90	16.44	1e-93	hypothetical protein
	bfu:BC1G_13639	141	325	185	n/a	100.00	185	89.19	0.00	2e-87	hypothetical protein
	spo:SPAC926.08c	1	296	296	Gaps:5	92.43	317	50.51	20.48	1e-80	Brix domain protein Rpf2 (predicted)
	afm:AFUA_8G04790	1	295	295	Gaps:10	90.61	330	50.84	19.40	2e-80	ribosome biogenesis protein
blastp_uniprot_sprot	sp\|Q9UUG1\|RPF2_SCHPO	1	296	296	Gaps:5	92.43	317	50.51	20.48	1e-81	Ribosome production factor 2 homolog OS Schizosaccharomyces pombe GN SPAC926.08c PE 1 SV 1
	sp\|P36160\|RPF2_YEAST	1	294	294	Gaps:8	85.47	344	49.66	19.39	6e-76	Ribosome biogenesis protein RPF2 OS Saccharomyces cerevisiae GN RPF2 PE 1 SV 1
	sp\|Q9VEB3\|RPF2_DROME	1	296	296	Gaps:11	89.06	320	40.00	24.56	3e-58	Ribosome production factor 2 homolog OS Drosophila melanogaster GN CG7993 PE 2 SV 3
	sp\|Q9H7B2\|RPF2_HUMAN	3	295	293	Gaps:12	91.83	306	42.70	21.71	3e-58	Ribosome production factor 2 homolog OS Homo sapiens GN RPF2 PE 1 SV 2
	sp\|Q2YDN6\|RPF2_BOVIN	3	295	293	Gaps:12	91.83	306	42.70	21.35	4e-58	Ribosome production factor 2 homolog OS Bos taurus GN RPF2 PE 2 SV 1
	sp\|Q9JJ80\|RPF2_MOUSE	5	295	291	Gaps:12	91.18	306	41.22	22.58	1e-57	Ribosome production factor 2 homolog OS Mus musculus GN Rpf2 PE 2 SV 2
	sp\|Q9N3F0\|RPF2_CAEEL	1	296	296	Gaps:11	95.96	297	36.49	22.81	1e-46	Ribosome production factor 2 homolog OS Caenorhabditis elegans GN Y54E10A.10 PE 2 SV 1
	sp\|Q54DJ0\|RPF2_DICDI	12	294	283	Gaps:12	88.27	307	35.06	21.40	3e-41	Ribosome production factor 2 homolog OS Dictyostelium discoideum GN bxdc1 PE 3 SV 1
	sp\|Q9LUG5\|RPF2_ARATH	1	297	297	Gaps:18	93.31	314	37.54	21.16	2e-39	Ribosome production factor 2 homolog OS Arabidopsis thaliana GN At3g23620 PE 2 SV 1
	sp\|Q9AWM9\|RPF2_ORYSJ	7	297	291	Gaps:20	91.94	310	37.89	21.40	4e-39	Ribosome production factor 2 homolog OS Oryza sativa subsp. japonica GN Os01g0513800 PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|34709	1	315	315	Gaps:6	99.05	316	42.17	21.09	7e-74	COG5106 RPF2 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|146859	32	237	206	Gaps:26	100.00	180	33.89	16.67	5e-32	pfam04427 Brix Brix domain.
	gnl\|CDD\|129112	31	232	202	Gaps:24	100.00	180	37.22	14.44	1e-28	smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
rpsblast_kog	gnl\|CDD\|38241	1	317	317	Gaps:11	99.67	307	46.73	20.92	2e-81	KOG3031 KOG3031 KOG3031 Protein required for biogenesis of the ribosomal 60S subunit [Translation ribosomal structure and biogenesis].

Other analysis

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	B4BC_116_241_D04	815058	815780	723	100.00	100.00	n/a	B0510 Germinated spores on bean leaves library
	PD0ACA2YM03FM1	815088	815892	805	100.00	100.00	n/a	BT4 mycelium - pH stress library
	YCKA_558509	814943	815609	604	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_563914	814945	815555	548	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_555378	814945	815383	377	99.73	100.00	n/a	Botrytis cinerea HortResearch libraries
	B1BC_045_023_A09	814936	815658	660	99.55	100.00	n/a	BC ATCC 58025 (G3)
	B1BC_045_023_A11	814936	815644	647	98.76	100.00	n/a	BC ATCC 58025 (G3)
	PD0ABA20YD18FM1	814937	815687	688	100.00	100.00	n/a	BT4 young mycelium library
	PD0ACA13YE24FM1	814951	815748	735	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0ACA8YE19FM1	814925	815728	741	99.87	100.00	n/a	BT4 mycelium - pH stress library
	PD0ACA7YJ07FM1	814938	815710	710	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0ACA4YC04FM1	814911	815684	711	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0ACA16YF01FM1	815399	816046	648	99.85	100.00	n/a	BT4 mycelium - pH stress library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_2_1_bt4ctg_0078_011.Contig1_v5	814911	816046	1073	99.91	100.00	n/a	all_lib_clone_nr:10
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q9UUG1	815059	815988	317	48.54	97.48	n/a	Brix domain-containing protein 1 homolog - Schizosaccharomyces pombe (Fission yeast)
	P36160	815053	815976	344	48.70	89.53	n/a	Ribosome biogenesis protein RPF2 - Saccharomyces cerevisiae (Baker's yeast)
	Q2YDN6	815059	815955	306	42.21	94.44	n/a	Brix domain-containing protein 1 - Bos taurus (Bovine)
	Q9H7B2	815059	815955	306	41.87	94.44	n/a	Brix domain-containing protein 1 - Homo sapiens (Human)
	Q9JJ80	815059	815958	306	41.18	94.44	n/a	Brix domain-containing protein 1 - Mus musculus (Mouse)
	Q9VEB3	815059	815931	320	40.00	87.50	n/a	Brix domain-containing protein 1 homolog - Drosophila melanogaster (Fruit fly)
	Q9N3F0	815059	815931	297	36.43	94.28	n/a	Brix domain-containing protein 1 homolog - Caenorhabditis elegans
	Q9LUG5	815062	815934	314	38.68	91.40	n/a	Brix domain-containing protein 1 homolog - Arabidopsis thaliana (Mouse-ear cress)
	Q9AWM9	815062	815934	310	37.89	91.94	n/a	Brix domain-containing protein 1 homolog - Oryza sativa subsp. japonica (Rice)
blastx_uniprot_trembl	Q7SCN3	815059	815952	341	65.13	89.15	n/a	Putative uncharacterized protein - Neurospora crassa
	Q5EMU9	815059	815952	326	63.70	92.94	n/a	Brix domain-containing protein-like protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	A4RNC2	815059	815952	356	63.70	85.11	n/a	Ribosome biogenesis protein putative - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q2HFS7	815059	816018	338	59.94	98.22	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q0UVX1	815053	816015	330	55.52	98.79	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A2R8Q9	815059	816018	328	48.92	98.48	n/a	Similarity: patentmatch against ovarian tissue derived protein 18 Y59741 Patentprot - Aspergillus niger
	Q4WCD7	815059	816012	330	49.54	97.88	n/a	Ribosome biogenesis protein putative - Aspergillus fumigatus (Sartorya fumigata)
	A1DB91	815059	816012	330	49.54	97.88	n/a	Ribosome biogenesis protein putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
blastx_FNG30_prot	SS1G_07742.1	815059	816018	324	97.81	98.46	n/a	sclerotinia_sclerotiorum hypothetical protein translation 325 aa
	FG01175.1	815059	815949	319	73.40	93.10	n/a	fusarium_graminearum hypothetical protein 320 aa
	jgi:Triree:40604	815059	816015	316	66.24	98.42	n/a	Trichoderma reesei
	NCU08595.2	815059	815952	341	65.13	89.15	n/a	Neurospora crassa hypothetical protein translation 342 aa
	MGG_10382.5	815059	815952	356	63.70	85.11	n/a	magnaporthe_grisea ribosome biogenesis protein putative translation 357 aa
	CHG00927.1	815059	816018	338	59.94	98.22	n/a	Chaetomium globosum hypothetical protein translation 339 aa
	SNU04093.1	815089	816015	315	54.78	99.68	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70983516:ref:XP_747285.1:	815059	816012	330	49.54	97.88	n/a	Aspergillus fumigatus Af293 ribosome biogenesis protein
	AO090005000668	815059	816018	330	49.23	98.48	n/a	Aspergillus oryzae protein required for biogenesis of the ribosomal 60S subunit
	gi:50543150:ref:XP_499741.1	815059	815970	321	53.18	93.15	n/a	Yarrowia lipolytica hypothetical protein
sim4_B0510_genes	BC1G_13639.1	815464	816021	558	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_07742.1	814981	816021	975	89.74	100.00	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.120	809570	815292	115038	99.93	n/a	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.120	815388	816101	115038	100.00	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.10	814905	815969	1547569	88.45	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.10	815965	816085	1547569	90.91	n/a	n/a	n/a
blat_oligo	botrytisP00041325	814981	815103	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:9.38 . min_over_threshold:0.82 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041326	815140	815199	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:15.98 . min_over_threshold:0.88 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041327	815372	815431	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:13.21 . min_over_threshold:0.8 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041328	815473	815532	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:24.11 . min_over_threshold:0.92 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041329	815507	815566	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:22.81 . min_over_threshold:0.98 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041330	815574	815633	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:39.04 . min_over_threshold:1.37 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041331	815676	815735	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:41.66 . min_over_threshold:1.56 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041333	815891	815950	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:32.49 . min_over_threshold:0.92 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041334	815962	816021	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:57.61 . min_over_threshold:1.25 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00041325	814981	815103	60	n/a	n/a	n/a	array_gene:BofuT4_P006060_1 . max_over_threshold:9.38 . min_over_threshold:0.82 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Analysis

Type

Start

End

Ortholog

Current manual annotation

Functional edition

Gene ID:

Gene Name:

Synonym:

PMID:

Functional validation status

Not validate Validate

Evidence Code :

Gene function:

Comments:

Gene Ontology:

Search ontology by term or ID (for this enter only number) :

Gene prediction at gene locus

TreeView