workDir=/archivedatagnpis/genotypage/Peamust/Phr/gpprod
vcfInput=/archivedatagnpis/genotypage/Peamust/Phr/Peamust_WP1Phr.snponV2_v1a_final_public_v2_final.vcf
insertAll=true

excelFile=/archivedatagnpis/genotypage/Peamust/Phr/PeaMUST_WP1_panel_calibration_Phr_public.xlsx
experimentName=PeaMUST_WP1_Phr_panel_calibration
# To set only if you use the "index_only" job
#experimentId=64
taxonGroup=Pea
genomeHasChromosome=true
encoding=UTF-8
versionNumber=16_2

#scripts
# in general: $etl/GnpSNP/perl/checkVCF/checkVCF.py
scriptCheck=/archivedatagnpis/genotypage/bin/checkVCF.py
#in general: $etl/Genotype/tools/genotyping_matrix_to_json.pl
matrixToJsonProgramPath=/archivedatagnpis/genotypage/bin/genotyping_matrix_to_json.pl
#in general: $etl/GnpSNP/perl/markers_agg_to_polym_loci_json.pl
markerToJsonProgramPath=/archivedatagnpis/genotypage/bin/markers_agg_to_polym_loci_json.pl
PlantMaterialExecutable=/archivedatagnpis/genotypage/bin/Orchestration_PlantMaterial_0.1/Orchestration_PlantMaterial/Orchestration_PlantMaterial_run.sh
PlantMaterialVersion=17_1
SiregalExecutable=/archivedatagnpis/genotypage/bin/Orchestration_RG_0.1/Orchestration_RG/Orchestration_RG_run.sh
APIdoiTest=true

groupId=46
aster_pg_Database=
aster_pg_Login=
aster_pg_Password=
aster_pg_Schema=
aster_pg_Port=
aster_pg_Server=

lotInMatrix=false
elasticSearchNode=shelob.versailles.inra.fr:9110
#nb of matrix lines in one matrix json file to be indexed
rowsPerEsDoc=1000
# name of the index that will contain these data. Usually we maintain 1 index by species group. The index name must start with the "matrix_" prefix.
indexName=restored_index_matrix_pea_2156
markerIndexName=restored_index_markers_pea_2156
#nb of markers in one polymLoci json file to be indexed
rowsPerPolymLociEsDoc=10000
# uncomment this option if your last job run has failed before the end.
#errorRecovery=true
pythonInterpreter=/home/urgi/nmohelli/python/Python-2.7.2/python