Publicly available databanks for BLAST at URGI
| description | type | restricted to |
|---|---|---|
| Amborella_trichopoda fasta consensus from RepetDB v2 | N | public |
| Malus x domestica 16X predicted CDS from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Malus x domestica 16X pseudochromosomes from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Malus x domestica 16X WGS contigs from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Arabidopsis_halleri fasta consensus from RepetDB v2 | N | public |
| Arabidopsis_lyrata fasta consensus from RepetDB v2 | N | public |
| Arabidopsis_thaliana fasta consensus from RepetDB v2 | N | public |
| Arabis_alpina fasta consensus from RepetDB v2 | N | public |
| Arabidopsis thaliana TAIR v10 all chromosomes | N | public |
| Botrytis cinerea B05.10 proteins | P | public |
| Botrytis cinerea B0510 fasta consensus from RepetDB v2 | N | public |
| Botrytis_cinerea_T4 fasta consensus from RepetDB v2 | N | public |
| Beta_vulgaris fasta consensus from RepetDB v2 | N | public |
| Blumeria graminis hordei DH14 fasta consensus from RepetDB v2 | N | public |
| Botrytis cinerea T4 CDS (nuc) | N | public |
| Brachypodium_sylvaticum fasta consensus from RepetDB v2 | N | public |
| Brassica_rapa fasta consensus from RepetDB v2 | N | public |
| Botrytis cinerea T4 genome scaffolds | N | public |
| Cakile_maritima fasta consensus from RepetDB v2 | N | public |
| Capsella_grandiflora fasta consensus from RepetDB v2 | N | public |
| Capsella_rubella fasta consensus from RepetDB v2 | N | public |
| Carica_papaya fasta consensus from RepetDB v2 | N | public |
| Colletotrichum_higginsianum_IMI349063 fasta consensus from RepetDB v2 | N | public |
| Citrus_clementina fasta consensus from RepetDB v2 | N | public |
| Citrus_sinensis fasta consensus from RepetDB v2 | N | public |
| Cleome_violacea fasta consensus from RepetDB v2 | N | public |
| Crambe_hispanica fasta consensus from RepetDB v2 | N | public |
| IWGSC WGA v0.4 all chromosomes scaffolds | N | public |
| IWGSC WGA v0.4 chromosome 1A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 1B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 1D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome Unknown scaffolds only | N | public |
| Eruca_vesicaria fasta consensus from RepetDB v2 | N | public |
| Eucalyptus_grandis fasta consensus from RepetDB v2 | N | public |
| Fragaria_vesca fasta consensus from RepetDB v2 | N | public |
| Glycine_max fasta consensus from RepetDB v2 | N | public |
| Gossypium_raimondii fasta consensus from RepetDB v2 | N | public |
| wheat sequence survey V2 chromosome 1AL_v2 | N | public |
| wheat sequence survey V2 chromosome 1AS | N | public |
| wheat sequence survey V2 chromosome 1BL | N | public |
| wheat sequence survey V2 chromosome 1BS | N | public |
| wheat sequence survey V2 chromosome 1DL | N | public |
| wheat sequence survey V2 chromosome 1DS | N | public |
| wheat sequence survey V2 chromosome 2AL | N | public |
| wheat sequence survey V2 chromosome 2AS | N | public |
| wheat sequence survey V2 chromosome 2BL | N | public |
| wheat sequence survey V2 chromosome 2BS | N | public |
| wheat sequence survey V2 chromosome 2DL | N | public |
| wheat sequence survey V2 chromosome 2DS | N | public |
| wheat sequence survey V2 chromosome 3AL | N | public |
| wheat sequence survey V2 chromosome 3AS | N | public |
| wheat sequence survey V2 chromosome 3B | N | public |
| wheat sequence survey V2 chromosome 3DL | N | public |
| wheat sequence survey V2 chromosome 3DS | N | public |
| wheat sequence survey V2 chromosome 4AL_v2 | N | public |
| wheat sequence survey V2 chromosome 4AS_v2 | N | public |
| wheat sequence survey V2 chromosome 4BL | N | public |
| wheat sequence survey V2 chromosome 4BS | N | public |
| wheat sequence survey V2 chromosome 4DL_v3 | N | public |
| wheat sequence survey V2 chromosome 4DS | N | public |
| wheat sequence survey V2 chromosome 5AL | N | public |
| wheat sequence survey V2 chromosome 5AS | N | public |
| wheat sequence survey V2 chromosome 5BL | N | public |
| wheat sequence survey V2 chromosome 5BS | N | public |
| wheat sequence survey V2 chromosome 5DL | N | public |
| wheat sequence survey V2 chromosome 5DS | N | public |
| wheat sequence survey V2 chromosome 6AL | N | public |
| wheat sequence survey V2 chromosome 6AS | N | public |
| wheat sequence survey V2 chromosome 6BL | N | public |
| wheat sequence survey V2 chromosome 6BS | N | public |
| wheat sequence survey V2 chromosome 6DL | N | public |
| wheat sequence survey V2 chromosome 6DS | N | public |
| wheat sequence survey V2 chromosome 7AL | N | public |
| wheat sequence survey V2 chromosome 7AS | N | public |
| wheat sequence survey V2 chromosome 7BL | N | public |
| wheat sequence survey V2 chromosome 7BS | N | public |
| wheat sequence survey V2 chromosome 7DL | N | public |
| wheat sequence survey V2 chromosome 7DS | N | public |
| wheat sequence survey V2 all chromosomes A | N | public |
| wheat sequence survey V2 all chromosomes B | N | public |
| wheat sequence survey V2 all chromosomes D | N | public |
| Wheat chromosome 3b v2.1 TE Consensus library (Detection using REPET v2.1 on a 300 Mbp subset of chromosome 3b) | N | public |
| IWGSC RefSeq v1.0 chromosome 1A only | N | public |
| IWGSC RefSeq v1.0 chromosome 1B only | N | public |
| IWGSC RefSeq v1.0 chromosome 1D only | N | public |
| IWGSC RefSeq v1.0 chromosome 2A only | N | public |
| IWGSC RefSeq v1.0 chromosome 2B only | N | public |
| IWGSC RefSeq v1.0 chromosome 2D only | N | public |
| IWGSC RefSeq v1.0 chromosome 3A only | N | public |
| IWGSC RefSeq v1.0 chromosome 3B only | N | public |
| IWGSC RefSeq v1.0 chromosome 3D only | N | public |
| IWGSC RefSeq v1.0 chromosome 4A only | N | public |
| IWGSC RefSeq v1.0 chromosome 4B only | N | public |
| IWGSC RefSeq v1.0 chromosome 4D only | N | public |
| IWGSC RefSeq v1.0 chromosome 5A only | N | public |
| IWGSC RefSeq v1.0 chromosome 5B only | N | public |
| IWGSC RefSeq v1.0 chromosome 5D only | N | public |
| IWGSC RefSeq v1.0 chromosome 6A only | N | public |
| IWGSC RefSeq v1.0 chromosome 6B only | N | public |
| IWGSC RefSeq v1.0 chromosome 6D only | N | public |
| IWGSC RefSeq v1.0 chromosome 7A only | N | public |
| IWGSC RefSeq v1.0 chromosome 7B only | N | public |
| IWGSC RefSeq v1.0 chromosome 7D only | N | public |
| IWGSC RefSeq v1.0 chromosome Unknown only | N | public |
| IWGSC RefSeq v2.1 chromosome 1A only | N | public |
| IWGSC RefSeq v2.1 chromosome 1B only | N | public |
| IWGSC RefSeq v2.1 chromosome 1D only | N | public |
| IWGSC RefSeq v2.1 chromosome 2A only | N | public |
| IWGSC RefSeq v2.1 chromosome 2B only | N | public |
| IWGSC RefSeq v2.1 chromosome 2D only | N | public |
| IWGSC RefSeq v2.1 chromosome 3A only | N | public |
| IWGSC RefSeq v2.1 chromosome 3B only | N | public |
| IWGSC RefSeq v2.1 chromosome 3D only | N | public |
| IWGSC RefSeq v2.1 chromosome 4A only | N | public |
| IWGSC RefSeq v2.1 chromosome 4B only | N | public |
| IWGSC RefSeq v2.1 chromosome 4D only | N | public |
| IWGSC RefSeq v2.1 chromosome 5A only | N | public |
| IWGSC RefSeq v2.1 chromosome 5B only | N | public |
| IWGSC RefSeq v2.1 chromosome 5D only | N | public |
| IWGSC RefSeq v2.1 chromosome 6A only | N | public |
| IWGSC RefSeq v2.1 chromosome 6B only | N | public |
| IWGSC RefSeq v2.1 chromosome 6D only | N | public |
| IWGSC RefSeq v2.1 chromosome 7A only | N | public |
| IWGSC RefSeq v2.1 chromosome 7B only | N | public |
| IWGSC RefSeq v2.1 chromosome 7D only | N | public |
| IWGSC RefSeq v2.1 chromosome Unknown only | N | public |
| IWGSC RefSeq v1.0 all chromosomes | N | public |
| IWGSC RefSeq v2.1 all chromosomes | N | public |
| wheat sequence survey V3 chromosome 1AL | N | public |
| wheat sequence survey V3 chromosome 1AS | N | public |
| wheat sequence survey V3 chromosome 1BL | N | public |
| wheat sequence survey V3 chromosome 1BS | N | public |
| wheat sequence survey V3 chromosome 1DL | N | public |
| wheat sequence survey V3 chromosome 1DS | N | public |
| wheat sequence survey V3 chromosome 2AL | N | public |
| wheat sequence survey V3 chromosome 2AS | N | public |
| wheat sequence survey V3 chromosome 2BL | N | public |
| wheat sequence survey V3 chromosome 2BS | N | public |
| wheat sequence survey V3 chromosome 2DL | N | public |
| wheat sequence survey V3 chromosome 2DS | N | public |
| wheat sequence survey V3 chromosome 3AL | N | public |
| wheat sequence survey V3 chromosome 3AS | N | public |
| wheat sequence survey V3 chromosome 3B | N | public |
| wheat sequence survey V3 chromosome 3DL | N | public |
| wheat sequence survey V3 chromosome 3DS | N | public |
| wheat sequence survey V3 chromosome 4AL | N | public |
| wheat sequence survey V3 chromosome 4AS | N | public |
| wheat sequence survey V3 chromosome 4BL | N | public |
| wheat sequence survey V3 chromosome 4BS | N | public |
| wheat sequence survey V3 chromosome 4DL | N | public |
| wheat sequence survey V3 chromosome 4DS | N | public |
| wheat sequence survey V3 chromosome 5AL | N | public |
| wheat sequence survey V3 chromosome 5AS | N | public |
| wheat sequence survey V3 chromosome 5BL | N | public |
| wheat sequence survey V3 chromosome 5BS | N | public |
| wheat sequence survey V3 chromosome 5DL | N | public |
| wheat sequence survey V3 chromosome 5DS | N | public |
| wheat sequence survey V3 chromosome 6AL | N | public |
| wheat sequence survey V3 chromosome 6AS | N | public |
| wheat sequence survey V3 chromosome 6BL | N | public |
| wheat sequence survey V3 chromosome 6BS | N | public |
| wheat sequence survey V3 chromosome 6DL | N | public |
| wheat sequence survey V3 chromosome 6DS | N | public |
| wheat sequence survey V3 chromosome 7AL | N | public |
| wheat sequence survey V3 chromosome 7AS | N | public |
| wheat sequence survey V3 chromosome 7BL | N | public |
| wheat sequence survey V3 chromosome 7BS | N | public |
| wheat sequence survey V3 chromosome 7DL | N | public |
| wheat sequence survey V3 chromosome 7DS | N | public |
| wheat sequence survey V3 all chromosomes A | N | public |
| wheat sequence survey V3 all chromosomes B | N | public |
| wheat sequence survey V3 all chromosomes D | N | public |
| Kalanchoe_fedtschenkoi fasta consensus from RepetDB v2 | N | public |
| Leptosphaeria maculans Bac End Sequences | N | public |
| Leptosphaeria maculans CDS (nuc) | N | public |
| Leptosphaeria maculans proteins | P | public |
| Leptosphaeria maculans genome (scaffolds) | N | public |
| PRJEB22687 chromosome 1A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 1B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 2A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 2B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 3A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 3B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 4A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 4B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 5A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 5B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 6A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 6B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 7A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 7B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| Marchantia_polymorpha fasta consensus from RepetDB v2 | N | public |
| Medicago_truncatula fasta consensus from RepetDB v2 | N | public |
| Melampsora_larici_populina_98AG31 fasta consensus from RepetDB v2 | N | public |
| Microtryum_violaceum_P1A1 fasta consensus from RepetDB v2 | N | public |
| Magnaporthe_oryzae_7015 fasta consensus from RepetDB v2 | N | public |
| Musa_acuminata fasta consensus from RepetDB v2 | N | public |
| Oak transcriptome (de novo assembly; Lesur et al. 2015) | N | public |
| E. alphytoides genes prediction V1.0 from Augustus V2.6.1 | N | public |
| E. alphytoides contigs V1.0 assembly reference CLCBio 7.0.3 | N | public |
| Oryza_sativa fasta consensus from RepetDB v2 | N | public |
| Ostreococcus_lucimarinus fasta consensus from RepetDB v2 | N | public |
| Puccinia_graminis_CRL75-36-700-3 fasta consensus from RepetDB v2 | N | public |
| Phaseolus_vulgaris fasta consensus from RepetDB v2 | N | public |
| Physcomitrella_patens fasta consensus from RepetDB v2 | N | public |
| Pisum sativum genome assembly version 1a (pseudomolecule + unassigned scaffolds) | N | public |
| Pisum sativum version 1a (cds) | N | public |
| Pisum sativum version 1a (prot) | P | public |
| Plantgene non redundant proteins (february 2003) from Genoplante | P | public |
| Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4 (updated 2017-01-23) | N | public |
| Populus_trichocarpa fasta consensus from RepetDB v2 | N | public |
| PRJEB22687 all chromosomes Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| Prunus_persica fasta consensus from RepetDB v2 | N | public |
| Pyrus_communis fasta consensus from RepetDB v2 | N | public |
| Quercus robur genome assembly PM1N (haploid Pseudomolecule + unassigned scaffolds) | N | public |
| Quercus robur CDS (aa) predicted on PM1N | P | public |
| Quercus robur CDS (nt) predicted on PM1N | N | public |
| Quercus robur genome assembly V1_2N (diploid version 1; Plomion et al. 2016) | N | public |
| Quercus robur genome assembly V2_2N (diploid Version 2) | N | public |
| Quercus robur CDS (nt) from genome assembly V2_2N (diploid Version 2) | N | public |
| Quercus robur CDS (aa) from genome assembly V2_2N (diploid Version 2) | P | public |
| Rosa_chinensis_OBDH fasta consensus from RepetDB v2 | N | public |
| Rosa_chinensis_RchiOBHm fasta consensus from RepetDB v2 | N | public |
| Schrenkiella_parvula fasta consensus from RepetDB v2 | N | public |
| Solanum_tuberosum fasta consensus from RepetDB v2 | N | public |
| Sorghum_bicolor fasta consensus from RepetDB v2 | N | public |
| Sclerotinia sclerotiorum proteins | P | public |
| Sclerotinia_sclerotiorum_UF70 fasta consensus from RepetDB v2 | N | public |
| Wheat reference sequence chromosome 3B CDS only (nucleotide) | N | public |
| Wheat reference sequence chromosome 3B CDS only (peptide) | P | public |
| Wheat reference sequence chromosome 3B | N | public |
| WHEAT individual chromosome 3A shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 4AL shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 4AS shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 5A shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 6BL shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 6BS shotgun sequences (low coverage 454 data) | N | public |
| Wheat TGACv1 whole genome shotgun assembly | N | public |
| Triticum aestivum Renan RefSeq v2.1 assembly | N | public |
| Durum Cappelli v1 | N | public |
| Monococcum v1 | N | public |
| Speltoides v1 | N | public |
| Durum Strongfield v1 | N | public |
| Tauschii v1 | N | public |
| Urartu v1 | N | public |
| Theobroma_cacao fasta consensus from RepetDB v2 | N | public |
| Tuber_melanosporum_28 fasta consensus from RepetDB v2 | N | public |
| Triticum_aestivum fasta consensus from RepetDB v2 | N | public |
| Sharonensis v1 | N | public |
| Vitis_vinifera fasta consensus from RepetDB v2 | N | public |
| Vitis vinifera 12X PN40024 Scaffolds from The French-Italian Public Consortium | N | public |
| Vitis vinifera 12X PN40024 WGS contigs from The French-Italian Public Consortium | N | public |
| Vitis vinifera 12Xv2 genome Annotation VCost.v3 nucleic | N | public |
| Vitis vinifera 12Xv2 genome Annotation VCost.v3 protein | P | public |
| Vitis vinifera 12X.2 PN40024 Chromosomes from The French-Italian Public Consortium | N | public |
| Vitis vinifera 8X PN40024 Chromosomes from The French-Italian Public Consortium | N | public |
| Vitis vinifera WGS Pinot Noir clone ENTAV 115 | N | public |
| Wheat ESTs from MTD ITEC (august 2002) | N | public |
| Wheat markers primers from GnpIS | N | public |
| Wheat public clustering (march 2006) | N | public |
| Zea_mays fasta consensus from RepetDB v2 | N | public |
| Maize RefGen V3 CDNA from Gramene.org database (release 5b+) | N | public |
| Maize RefGen V3 CDS from Gramene.org database (release 5b+) | N | public |
| Maize RefGen V3 Peptides from Gramene.org database (release 5b+) | P | public |
| Maize RefGen V3 Scaffolds from Gramene.org database (release 5b+) | N | public |
| Zostera_marina fasta consensus from RepetDB v2 | N | public |