Publicly available databanks for BLAST at URGI
| description | type | restricted to |
|---|---|---|
| Triticum aestivum filtered TE Consensus library from RepetDB made with genome assembly V2.1 chromosom 3B | N | public |
| Arabis alpina filtered TE Consensus library from RepetDB made with genome assembly A_alpina_V4 | N | public |
| Arabidopsis lyrata subsp. lyrata filtered TE Consensus library from RepetDB made with genome assembly A_lyrata_V1 | N | public |
| Malus x domestica 16X predicted CDS from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Malus x domestica 16X pseudochromosomes from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Malus x domestica 16X WGS contigs from the italian initiative (FEM-IASMA) (april 2010) | N | public |
| Arabidopsis thaliana TAIR v10 all chromosomes | N | public |
| Arabidopsis thaliana (thale cress) filtered TE Consensus library from RepetDB made with genome assembly araTha1 | N | public |
| Botrytis cinerea B05.10 proteins | P | public |
| Botrytis cinerea B05.10 filtered TE Consensus library from RepetDB made with genome assembly ASM83294v1 | N | public |
| Botrytis cinerea T4 CDS (nuc) | N | public |
| Brassica rapa filtered TE Consensus library from RepetDB made with genome assembly braRap1 | N | public |
| Botrytis cinerea T4 genome scaffolds | N | public |
| Capsella rubella filtered TE Consensus library from RepetDB made with genome assembly Caprub1_0 | N | public |
| IWGSC WGA v0.4 all chromosomes scaffolds | N | public |
| IWGSC WGA v0.4 chromosome 1A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 1B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 1D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 2D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 3D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 4D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 5D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 6D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7A scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7B scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome 7D scaffolds only | N | public |
| IWGSC WGA v0.4 chromosome Unknown scaffolds only | N | public |
| Fragaria vesca filtered TE Consensus library from RepetDB made with genome assembly Fragaria_vesca_v2.0.a1 | N | public |
| Prunus persica filtered TE Consensus library from RepetDB made with genome assembly Prunus_persica_v2.0.a1 | N | public |
| Pyrus communis filtered TE Consensus library from RepetDB made with genome assembly Pyrus_communis_v1.0 | N | public |
| Malus domestica filtered TE Consensus library from RepetDB made with genome assembly ASM211411v1 | N | public |
| wheat sequence survey V2 chromosome 1AL_v2 | N | public |
| wheat sequence survey V2 chromosome 1AS | N | public |
| wheat sequence survey V2 chromosome 1BL | N | public |
| wheat sequence survey V2 chromosome 1BS | N | public |
| wheat sequence survey V2 chromosome 1DL | N | public |
| wheat sequence survey V2 chromosome 1DS | N | public |
| wheat sequence survey V2 chromosome 2AL | N | public |
| wheat sequence survey V2 chromosome 2AS | N | public |
| wheat sequence survey V2 chromosome 2BL | N | public |
| wheat sequence survey V2 chromosome 2BS | N | public |
| wheat sequence survey V2 chromosome 2DL | N | public |
| wheat sequence survey V2 chromosome 2DS | N | public |
| wheat sequence survey V2 chromosome 3AL | N | public |
| wheat sequence survey V2 chromosome 3AS | N | public |
| wheat sequence survey V2 chromosome 3B | N | public |
| wheat sequence survey V2 chromosome 3DL | N | public |
| wheat sequence survey V2 chromosome 3DS | N | public |
| wheat sequence survey V2 chromosome 4AL_v2 | N | public |
| wheat sequence survey V2 chromosome 4AS_v2 | N | public |
| wheat sequence survey V2 chromosome 4BL | N | public |
| wheat sequence survey V2 chromosome 4BS | N | public |
| wheat sequence survey V2 chromosome 4DL_v3 | N | public |
| wheat sequence survey V2 chromosome 4DS | N | public |
| wheat sequence survey V2 chromosome 5AL | N | public |
| wheat sequence survey V2 chromosome 5AS | N | public |
| wheat sequence survey V2 chromosome 5BL | N | public |
| wheat sequence survey V2 chromosome 5BS | N | public |
| wheat sequence survey V2 chromosome 5DL | N | public |
| wheat sequence survey V2 chromosome 5DS | N | public |
| wheat sequence survey V2 chromosome 6AL | N | public |
| wheat sequence survey V2 chromosome 6AS | N | public |
| wheat sequence survey V2 chromosome 6BL | N | public |
| wheat sequence survey V2 chromosome 6BS | N | public |
| wheat sequence survey V2 chromosome 6DL | N | public |
| wheat sequence survey V2 chromosome 6DS | N | public |
| wheat sequence survey V2 chromosome 7AL | N | public |
| wheat sequence survey V2 chromosome 7AS | N | public |
| wheat sequence survey V2 chromosome 7BL | N | public |
| wheat sequence survey V2 chromosome 7BS | N | public |
| wheat sequence survey V2 chromosome 7DL | N | public |
| wheat sequence survey V2 chromosome 7DS | N | public |
| wheat sequence survey V2 all chromosomes A | N | public |
| wheat sequence survey V2 all chromosomes B | N | public |
| wheat sequence survey V2 all chromosomes D | N | public |
| Wheat chromosome 3b v2.1 TE Consensus library (Detection using REPET v2.1 on a 300 Mbp subset of chromosome 3b) | N | public |
| IWGSC RefSeq v1.0 chromosome 1A only | N | public |
| IWGSC RefSeq v1.0 chromosome 1B only | N | public |
| IWGSC RefSeq v1.0 chromosome 1D only | N | public |
| IWGSC RefSeq v1.0 chromosome 2A only | N | public |
| IWGSC RefSeq v1.0 chromosome 2B only | N | public |
| IWGSC RefSeq v1.0 chromosome 2D only | N | public |
| IWGSC RefSeq v1.0 chromosome 3A only | N | public |
| IWGSC RefSeq v1.0 chromosome 3B only | N | public |
| IWGSC RefSeq v1.0 chromosome 3D only | N | public |
| IWGSC RefSeq v1.0 chromosome 4A only | N | public |
| IWGSC RefSeq v1.0 chromosome 4B only | N | public |
| IWGSC RefSeq v1.0 chromosome 4D only | N | public |
| IWGSC RefSeq v1.0 chromosome 5A only | N | public |
| IWGSC RefSeq v1.0 chromosome 5B only | N | public |
| IWGSC RefSeq v1.0 chromosome 5D only | N | public |
| IWGSC RefSeq v1.0 chromosome 6A only | N | public |
| IWGSC RefSeq v1.0 chromosome 6B only | N | public |
| IWGSC RefSeq v1.0 chromosome 6D only | N | public |
| IWGSC RefSeq v1.0 chromosome 7A only | N | public |
| IWGSC RefSeq v1.0 chromosome 7B only | N | public |
| IWGSC RefSeq v1.0 chromosome 7D only | N | public |
| IWGSC RefSeq v1.0 chromosome Unknown only | N | public |
| IWGSC RefSeq v2.1 chromosome 1A only | N | public |
| IWGSC RefSeq v2.1 chromosome 1B only | N | public |
| IWGSC RefSeq v2.1 chromosome 1D only | N | public |
| IWGSC RefSeq v2.1 chromosome 2A only | N | public |
| IWGSC RefSeq v2.1 chromosome 2B only | N | public |
| IWGSC RefSeq v2.1 chromosome 2D only | N | public |
| IWGSC RefSeq v2.1 chromosome 3A only | N | public |
| IWGSC RefSeq v2.1 chromosome 3B only | N | public |
| IWGSC RefSeq v2.1 chromosome 3D only | N | public |
| IWGSC RefSeq v2.1 chromosome 4A only | N | public |
| IWGSC RefSeq v2.1 chromosome 4B only | N | public |
| IWGSC RefSeq v2.1 chromosome 4D only | N | public |
| IWGSC RefSeq v2.1 chromosome 5A only | N | public |
| IWGSC RefSeq v2.1 chromosome 5B only | N | public |
| IWGSC RefSeq v2.1 chromosome 5D only | N | public |
| IWGSC RefSeq v2.1 chromosome 6A only | N | public |
| IWGSC RefSeq v2.1 chromosome 6B only | N | public |
| IWGSC RefSeq v2.1 chromosome 6D only | N | public |
| IWGSC RefSeq v2.1 chromosome 7A only | N | public |
| IWGSC RefSeq v2.1 chromosome 7B only | N | public |
| IWGSC RefSeq v2.1 chromosome 7D only | N | public |
| IWGSC RefSeq v2.1 chromosome Unknown only | N | public |
| IWGSC RefSeq v1.0 all chromosomes | N | public |
| wheat sequence survey V3 chromosome 1AL | N | public |
| wheat sequence survey V3 chromosome 1AS | N | public |
| wheat sequence survey V3 chromosome 1BL | N | public |
| wheat sequence survey V3 chromosome 1BS | N | public |
| wheat sequence survey V3 chromosome 1DL | N | public |
| wheat sequence survey V3 chromosome 1DS | N | public |
| wheat sequence survey V3 chromosome 2AL | N | public |
| wheat sequence survey V3 chromosome 2AS | N | public |
| wheat sequence survey V3 chromosome 2BL | N | public |
| wheat sequence survey V3 chromosome 2BS | N | public |
| wheat sequence survey V3 chromosome 2DL | N | public |
| wheat sequence survey V3 chromosome 2DS | N | public |
| wheat sequence survey V3 chromosome 3AL | N | public |
| wheat sequence survey V3 chromosome 3AS | N | public |
| wheat sequence survey V3 chromosome 3B | N | public |
| wheat sequence survey V3 chromosome 3DL | N | public |
| wheat sequence survey V3 chromosome 3DS | N | public |
| wheat sequence survey V3 chromosome 4AL | N | public |
| wheat sequence survey V3 chromosome 4AS | N | public |
| wheat sequence survey V3 chromosome 4BL | N | public |
| wheat sequence survey V3 chromosome 4BS | N | public |
| wheat sequence survey V3 chromosome 4DL | N | public |
| wheat sequence survey V3 chromosome 4DS | N | public |
| wheat sequence survey V3 chromosome 5AL | N | public |
| wheat sequence survey V3 chromosome 5AS | N | public |
| wheat sequence survey V3 chromosome 5BL | N | public |
| wheat sequence survey V3 chromosome 5BS | N | public |
| wheat sequence survey V3 chromosome 5DL | N | public |
| wheat sequence survey V3 chromosome 5DS | N | public |
| wheat sequence survey V3 chromosome 6AL | N | public |
| wheat sequence survey V3 chromosome 6AS | N | public |
| wheat sequence survey V3 chromosome 6BL | N | public |
| wheat sequence survey V3 chromosome 6BS | N | public |
| wheat sequence survey V3 chromosome 6DL | N | public |
| wheat sequence survey V3 chromosome 6DS | N | public |
| wheat sequence survey V3 chromosome 7AL | N | public |
| wheat sequence survey V3 chromosome 7AS | N | public |
| wheat sequence survey V3 chromosome 7BL | N | public |
| wheat sequence survey V3 chromosome 7BS | N | public |
| wheat sequence survey V3 chromosome 7DL | N | public |
| wheat sequence survey V3 chromosome 7DS | N | public |
| wheat sequence survey V3 all chromosomes A | N | public |
| wheat sequence survey V3 all chromosomes B | N | public |
| wheat sequence survey V3 all chromosomes D | N | public |
| Leptosphaeria maculans Bac End Sequences | N | public |
| Leptosphaeria maculans CDS (nuc) | N | public |
| Leptosphaeria maculans proteins | P | public |
| Leptosphaeria maculans genome (scaffolds) | N | public |
| PRJEB22687 chromosome 1A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 1B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 2A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 2B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 3A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 3B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 4A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 4B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 5A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 5B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 6A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 6B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 7A Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| PRJEB22687 chromosome 7B Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| Oak transcriptome (de novo assembly; Lesur et al. 2015) | N | public |
| E. alphytoides genes prediction V1.0 from Augustus V2.6.1 | N | public |
| E. alphytoides contigs V1.0 assembly reference CLCBio 7.0.3 | N | public |
| Pisum sativum genome assembly version 1a (pseudomolecule + unassigned scaffolds) | N | public |
| Pisum sativum version 1a (cds) | N | public |
| Pisum sativum version 1a (prot) | P | public |
| Pisum sativum version 1a (TEs) | N | public |
| Plantgene non redundant proteins (february 2003) from Genoplante | P | public |
| Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4 (updated 2017-01-23) | N | public |
| PRJEB22687 all chromosomes Assembly of the Durum Wheat (cv. Svevo) genome v1 | N | public |
| Vitis vinifera filtered TE Consensus library from RepetDB made with genome assembly PN40024_12X | N | public |
| Quercus robur genome assembly PM1N (haploid Pseudomolecule + unassigned scaffolds) | N | public |
| Quercus robur CDS (aa) predicted on PM1N | P | public |
| Quercus robur CDS (nt) predicted on PM1N | N | public |
| Quercus robur genome assembly V1_2N (diploid version 1; Plomion et al. 2016) | N | public |
| Quercus robur genome assembly V2_2N (diploid Version 2) | N | public |
| Quercus robur CDS (nt) from genome assembly V2_2N (diploid Version 2) | N | public |
| Quercus robur CDS (aa) from genome assembly V2_2N (diploid Version 2) | P | public |
| Botrytis cinerea T4 filtered TE Consensus library from RepetDB made with genome assembly BotFuc_Mar2011 | N | public |
| Blumeria graminis f. sp. hordei DH14 filtered TE Consensus library from RepetDB made with genome assembly ASM15106v3 | N | public |
| Colletotrichum higginsianum IMI 349063 (ascomycetes) filtered TE Consensus library from RepetDB made with genome assembly LTAN01000001 | N | public |
| Melampsora larici-populina 98AG31 filtered TE Consensus library from RepetDB made with genome assembly Melampsora_larici-populina_98AG31_v1.0 | N | public |
| Magnaporthe oryzae 70-15 (rice blast fungus) filtered TE Consensus library from RepetDB made with genome assembly MG8 | N | public |
| Microbotryum lychnidis-dioicae p1A1 Lamole filtered TE Consensus library from RepetDB made with genome assembly M_violaceum_V1 | N | public |
| Puccinia graminis f. sp. tritici CRL 75-36-700-3 filtered TE Consensus library from RepetDB made with genome assembly ASM14992v1 | N | public |
| Sclerotinia sclerotiorum 1980 UF-70 (ascomycetes) filtered TE Consensus library from RepetDB made with genome assembly ASM14694v2 | N | public |
| Tuber melanosporum filtered TE Consensus library from RepetDB made with genome assembly ASM15164v1 | N | public |
| Sclerotinia sclerotiorum proteins | P | public |
| Wheat reference sequence chromosome 3B CDS only (nucleotide) | N | public |
| Wheat reference sequence chromosome 3B CDS only (peptide) | P | public |
| Wheat reference sequence chromosome 3B | N | public |
| WHEAT individual chromosome 3A shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 4AL shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 4AS shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 5A shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 6BL shotgun sequences (low coverage 454 data) | N | public |
| WHEAT individual chromosome 6BS shotgun sequences (low coverage 454 data) | N | public |
| Wheat TGACv1 whole genome shotgun assembly | N | public |
| Durum Cappelli v1 | N | public |
| Monococcum v1 | N | public |
| Speltoides v1 | N | public |
| Durum Strongfield v1 | N | public |
| Tauschii v1 | N | public |
| Urartu v1 | N | public |
| Thellungiella parvula filtered TE Consensus library from RepetDB made with genome assembly Thellungiella_parvula_v2 | N | public |
| Sharonensis v1 | N | public |
| Vitis vinifera 12X PN40024 Scaffolds from The French-Italian Public Consortium | N | public |
| Vitis vinifera 12X PN40024 WGS contigs from The French-Italian Public Consortium | N | public |
| Vitis vinifera 12Xv2 genome Annotation VCost.v3 nucleic | N | public |
| Vitis vinifera 12Xv2 genome Annotation VCost.v3 protein | P | public |
| Vitis vinifera 12X.2 PN40024 Chromosomes from The French-Italian Public Consortium | N | public |
| Vitis vinifera 8X PN40024 Chromosomes from The French-Italian Public Consortium | N | public |
| Vitis vinifera WGS Pinot Noir clone ENTAV 115 | N | public |
| Wheat ESTs from MTD ITEC (august 2002) | N | public |
| Wheat markers primers from GnpIS | N | public |
| Wheat public clustering (march 2006) | N | public |
| Maize RefGen V3 CDNA from Gramene.org database (release 5b+) | N | public |
| Maize RefGen V3 CDS from Gramene.org database (release 5b+) | N | public |
| Maize RefGen V3 Peptides from Gramene.org database (release 5b+) | P | public |
| Maize RefGen V3 Scaffolds from Gramene.org database (release 5b+) | N | public |
| Zea mays filtered TE Consensus library from RepetDB made with genome assembly ZmB73_RefGen_v3 | N | public |