WheatMine contains IWGSC data from the official RefSeq v1.0 and v1.1 annotation. You will find:



  1. IWGSC Reference Sequence


    • IWGSC RefSeq v1.0 scaffolds
    • IWGSC RefSeq v1.0 superScaffolds

  2. Gene Model


    • High Confidence Genes from v1.0 and v1.1 annotation
    • Low Confidence Genes from v1.0 and v1.1 annotation

  3. Transposable Elements



  4. Markers


    • SNP (iSelect, Infinium9K, Infinium90K, Bristol, Axiom 820K)
    • DArTs (GBS,public,ver3)
    • EST (Nfs, Sourdille, wEST mapped)
    • SSR (Cfa,Cfd,Wmc,Wms,Barc,Gdm,Barc accessions)
    • MAS markers

  5. RNA


    • miRNA
    • lncRNA




Data are also available through:

  • the IWGSC RefSeq v1.0 JBrowse.
  • the assembly page on the wheat sequence repository.
  • the annotation page on the wheat sequence repository.