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GigaBayes

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  • Version: 0.4.1

command

  • gigaBayes gigaBuild gigaDump

GigaBayes


GigaBayes is the working name for a short-read SNP and short-INDEL discovery program. This version is specifically optimized for the analysis of large numbers (many millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes.

The software takes advantage of "random" access to DNA read data and assembly information stored in binary files. Computer programs for converting text-format sequence files and assembly formats are packaged together with the SNP caller software.

More information is available on Marth Lab Web page.


Access mode(s):

Command line on saruman.versailles.inra.fr

Keyword(s):

NGS SNP

Update: 12 Aug 2015
Creation date: 21 Oct 2011