| Analysis | rpsblast_cdd | Start | 6 |
| End | 86 | Strand | + |
| Length | 81 | Note | Gaps:7 |
| Hit Coverage | 42.51 | Hit Length | 207 |
| Hit Pident | 30.68 | E Val | 1e-08 |
| Hit Description | cd09856 PIN_FEN1-like PIN domain of Flap Endonuclease-1 (FEN1)-like structure-specific divalent-metal-ion dependent 5' nucleases. PIN (PilT N terminus) domain of Flap Endonuclease-1 (FEN1)-like nucleases: FEN1 Gap endonuclease 1 (GEN1) and Xeroderma pigmentosum complementation group G (XPG) nuclease are members of the structure-specific 5' nuclease family that catalyzes hydrolysis of DNA duplex-containing nucleic acid structures during DNA replication repair and recombination. These nucleases contain a PIN domain with a helical arch/clamp region (I domain) of variable length (approximately 30 to 800 residues) and a H3TH (helix-3-turn-helix) domain an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included here) and the helical arch/clamp region are involved in DNA binding. Most nucleases within this family also have a carboxylate rich active site that is involved in binding essential divalent metal ion cofactors (Mg2+/Mn2+). Some nucleases in this family have C-terminal extensions that act as interaction sites for other proteins. | Hit Pcons | 19.32 |
| Name | Qrob_P0612720.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0612720.2 | Quercus robur | 100.0 | egn | (M=3) K15338 - flap endonuclease GEN [EC:3.1.-.-] | validated |
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