| Analysis | rpsblast_cdd | Start | 54 |
| End | 125 | Strand | + |
| Length | 72 | Note | Gaps:3 |
| Hit Coverage | 51.02 | Hit Length | 147 |
| Hit Pident | 29.33 | E Val | 3e-09 |
| Hit Description | cd09866 PIN_Fcf1-Utp23-H PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi. PIN domain homologs of Fcf1/Utp24 (FAF1-copurifying factor 1/U three-associated protein 24) and Utp23 essential proteins involved in pre-rRNA processing and 40S ribosomal subunit assembly are included in this subfamily. Fcf1 is a component of the small subunit (SSU) processome and an essential nucleolar protein required for processing of the 18S pre-rRNA at sites A0-A2. These PIN (PilT N terminus) domains are homologs of flap endonuclease-1 (FEN1)-like PIN domains but apparently lack the H3TH domain or extensive arch/clamp region seen in the latter. PIN domains typically contain three or four conserved acidic residues (putative metal-binding active site residues). The Fcf1-Utp23 homolog PIN domain subfamily has three of these conserved acidic residues rather than the four seen in the Fcf1 PIN domain subfamily. | Hit Pcons | 22.67 |
| Name | Qrob_P0379590.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0379590.2 | Quercus robur | 100.0 | egn | (M=1) K14566 - U3 small nucleolar RNA-associated protein 24 | validated |
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