| Analysis | rpsblast_cdd | Start | 68 |
| End | 120 | Strand | + |
| Length | 53 | Note | none |
| Hit Coverage | 42.40 | Hit Length | 125 |
| Hit Pident | 45.28 | E Val | 2e-11 |
| Hit Description | cd09854 PIN_VapC-Smg6_family PIN domains of VapC and Smg6 ribonucleases ribosome assembly factor NOB1 rRNA-processing protein Fcf1 Archaeoglobus fulgidus AF0591 protein and homologs. PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC as well as eukaryotic ribonucleases such as Smg6 ribosome assembly factor NOB1 exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1 are included in this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain an atypical helix-hairpin-helix-2-like region seen in FEN1-like PIN domains. PIN domains typically contain three or four highly conserved acidic residues (putative metal-binding active site residues) which cluster at the C-terminal end of the beta-sheet and form a negatively charged pocket near the center of the molecule. | Hit Pcons | 20.75 |
| Name | Qrob_P0379590.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0379590.2 | Quercus robur | 100.0 | egn | (M=1) K14566 - U3 small nucleolar RNA-associated protein 24 | validated |
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