Blast Analysis : gnl|CDD|28920

Analysis  rpsblast_cdd Start  16
End  113 Strand  +
Length  98 Note  Gaps:3
Hit Coverage  86.09 Hit Length  115
Hit Pident  30.30 E Val  1e-10
Hit Description  cd00038 CAP_ED effector domain of the CAP family of transcription factors members include CAP (or cAMP receptor protein (CRP)) which binds cAMP FNR (fumarate and nitrate reduction) which uses an iron-sulfur cluster to sense oxygen) and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues the best studied is the prokaryotic catabolite gene activator CAP where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded antiparallel beta-barrel structure three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel CooA is a homodimeric transcription factor that belongs to CAP family cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain cAPK's are composed of two different subunits a catalytic chain and a regulatory chain which contains both copies of the domain cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section also found in vertebrate cyclic nucleotide-gated ion-channels. Hit Pcons  12.12
Name  Qrob_P0098090.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0098090.2 Quercus robur 89.0 egn (M=1) KOG0614//KOG1113 - cGMP-dependent protein kinase [Signal transduction mechanisms]. // cAMP-dependent protein kinase types I and II regulatory subunit [Signal transduction mechanisms].   EC:3.1.2.2 validated