Protein : Qrob_P0770890.2 Q. robur
Protein Identifier  ? Qrob_P0770890.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=14) 2.7.7.48 - RNA-directed RNA polymerase. Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 288  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102608769 12 286 + 275 Gaps:4 93.49 292 76.19 1e-148 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pop:POPTR_0008s13550g 12 287 + 276 Gaps:3 24.62 1133 76.34 2e-148 POPTRDRAFT_820696 RNA-directed RNA Polymerase family protein
blastp_kegg lcl|mdm:103430683 12 287 + 276 Gaps:2 40.12 683 78.10 3e-146 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|mdm:103444587 12 287 + 276 Gaps:2 24.96 1114 77.34 2e-145 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pper:PRUPE_ppa001524mg 12 287 + 276 Gaps:2 34.41 808 75.18 2e-145 hypothetical protein
blastp_kegg lcl|tcc:TCM_011292 12 286 + 275 Gaps:1 24.89 1109 76.45 1e-144 RNA-dependent RNA polymerase 1 isoform 1
blastp_kegg lcl|pxb:103943091 12 287 + 276 Gaps:2 24.91 1116 76.62 7e-143 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pmum:103320956 12 287 + 276 Gaps:2 24.76 1123 74.46 8e-143 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|vvi:100262811 12 286 + 275 Gaps:1 24.62 1121 76.09 6e-142 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|mdm:103451530 12 287 + 276 Gaps:2 24.60 1114 78.10 2e-141 probable RNA-dependent RNA polymerase 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 12 278 + 267 Gaps:5 23.67 1107 72.90 6e-122 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 12 266 + 255 Gaps:4 34.19 740 67.19 3e-113 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 12 270 + 259 Gaps:20 22.15 1133 43.43 3e-52 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 12 270 + 259 Gaps:23 22.36 1136 42.91 9e-50 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 12 263 + 252 Gaps:21 21.59 1218 37.26 2e-37 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 12 263 + 252 Gaps:13 22.16 1196 36.60 6e-34 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 6 264 + 259 Gaps:17 22.22 1215 29.26 3e-23 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5QMN4|RDR4_ORYSJ 34 110 + 77 Gaps:2 6.34 1183 34.67 4e-06 Probable RNA-dependent RNA polymerase 4 OS Oryza sativa subsp. japonica GN RDR4 PE 2 SV 2
rpsblast_cdd gnl|CDD|203192 26 114 + 89 Gaps:2 17.13 508 47.13 1e-22 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 12 264 + 253 Gaps:18 22.27 1145 40.78 4e-64 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 270 261 PTHR23079:SF1 none none none
Pfam 11 113 103 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 10 270 261 PTHR23079 none none IPR007855

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting