Protein : Qrob_P0770880.2 Q. robur
Protein Identifier  ? Qrob_P0770880.2 Organism . Name  Quercus robur
Score  1.1 Score Type  egn
Protein Description  (M=14) 2.7.7.48 - RNA-directed RNA polymerase. Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 861  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s13550g 1 859 + 859 Gaps:11 75.38 1133 72.25 0.0 POPTRDRAFT_820696 RNA-directed RNA Polymerase family protein
blastp_kegg lcl|cit:102608479 1 859 + 859 Gaps:15 75.80 1132 70.86 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|tcc:TCM_011292 1 859 + 859 Gaps:35 75.02 1109 74.04 0.0 RNA-dependent RNA polymerase 1 isoform 1
blastp_kegg lcl|vvi:100268011 1 859 + 859 Gaps:23 75.92 1109 71.50 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|vvi:100262811 1 859 + 859 Gaps:25 75.29 1121 70.85 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|gmx:100811587 1 859 + 859 Gaps:24 75.64 1125 69.33 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|fve:101291816 1 859 + 859 Gaps:26 75.34 1119 70.34 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pmum:103320956 1 859 + 859 Gaps:28 75.24 1123 69.82 0.0 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|cam:101509076 2 859 + 858 Gaps:29 75.22 1126 68.60 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pxb:103943091 1 859 + 859 Gaps:29 75.09 1116 68.50 0.0 probable RNA-dependent RNA polymerase 1
blastp_pdb 2j7o_A 494 857 + 364 Gaps:55 37.08 1022 25.07 6e-15 mol:protein length:1022 RNA DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_B 494 857 + 364 Gaps:55 37.08 1022 25.07 6e-15 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_A 494 857 + 364 Gaps:55 37.08 1022 25.07 6e-15 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 1 859 + 859 Gaps:46 75.61 1107 64.76 0.0 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 372 859 + 488 Gaps:25 62.57 740 69.33 0.0 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 4 859 + 856 Gaps:28 75.90 1133 38.95 0.0 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 82 859 + 778 Gaps:31 67.69 1136 38.49 4e-168 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 89 852 + 764 Gaps:108 64.55 1196 38.34 1e-129 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 183 857 + 675 Gaps:79 55.67 1218 40.41 6e-127 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 362 852 + 491 Gaps:50 39.75 1215 33.95 5e-70 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 354 834 + 481 Gaps:121 51.59 977 27.38 1e-16 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|Q5QMN4|RDR4_ORYSJ 472 834 + 363 Gaps:108 33.90 1183 27.43 2e-07 Probable RNA-dependent RNA polymerase 4 OS Oryza sativa subsp. japonica GN RDR4 PE 2 SV 2
rpsblast_cdd gnl|CDD|203192 372 834 + 463 Gaps:54 82.87 508 46.56 1e-122 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 1 859 + 859 Gaps:56 74.85 1145 35.82 0.0 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 102 860 759 PTHR23079 none none IPR007855
Pfam 372 854 483 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 102 860 759 PTHR23079:SF1 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting