Protein : Qrob_P0769850.2 Q. robur
Protein Identifier  ? Qrob_P0769850.2 Organism . Name  Quercus robur
Score  95.2 Score Type  egn
Protein Description  (M=5) PF08879//PF08880 - WRC // QLQ Gene Prediction Quality  validated
Protein length 

Sequence

Length: 237  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_016120 1 227 + 227 Gaps:14 79.79 287 60.70 3e-66 Growth-regulating factor 2
blastp_kegg lcl|vvi:100261588 1 216 + 216 Gaps:48 92.89 211 60.71 5e-62 uncharacterized LOC100261588
blastp_kegg lcl|pop:POPTR_0001s08310g 1 199 + 199 Gaps:21 96.04 202 55.15 4e-57 POPTRDRAFT_548554 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10022033mg 1 228 + 228 Gaps:15 96.12 232 54.26 4e-55 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1681810 1 219 + 219 Gaps:31 94.42 233 54.09 7e-54 hypothetical protein
blastp_kegg lcl|cit:102619103 1 228 + 228 Gaps:15 96.12 232 53.36 1e-51 growth-regulating factor 12-like
blastp_kegg lcl|pop:POPTR_0003s11800g 1 208 + 208 Gaps:19 100.00 201 53.23 2e-44 hypothetical protein
blastp_kegg lcl|csv:101211224 37 203 + 167 Gaps:37 50.20 502 46.43 2e-43 growth-regulating factor 9-like
blastp_kegg lcl|cmo:103483332 37 184 + 148 Gaps:21 42.12 501 52.61 2e-43 growth-regulating factor 9
blastp_kegg lcl|mus:103994239 64 215 + 152 Gaps:14 64.66 232 54.67 3e-43 growth-regulating factor 10-like
blastp_uniprot_sprot sp|Q6AWX7|GRF12_ORYSJ 65 225 + 161 Gaps:16 63.14 236 50.34 7e-38 Growth-regulating factor 12 OS Oryza sativa subsp. japonica GN GRF12 PE 2 SV 1
blastp_uniprot_sprot sp|Q6EPP9|GRF10_ORYSJ 65 185 + 121 Gaps:5 54.98 211 58.62 8e-36 Growth-regulating factor 10 OS Oryza sativa subsp. japonica GN GRF10 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 65 179 + 115 Gaps:11 26.87 387 61.54 1e-32 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q6AWX8|GRF11_ORYSJ 64 214 + 151 Gaps:7 54.28 269 44.52 1e-32 Growth-regulating factor 11 OS Oryza sativa subsp. japonica GN GRF11 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZIK5|GRF4_ORYSJ 65 179 + 115 Gaps:11 26.40 394 59.62 2e-32 Growth-regulating factor 4 OS Oryza sativa subsp. japonica GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY4|GRF5_ORYSJ 64 179 + 116 Gaps:3 33.62 348 57.26 1e-30 Growth-regulating factor 5 OS Oryza sativa subsp. japonica GN GRF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJR5|GRF3_ARATH 64 189 + 126 Gaps:6 30.15 398 55.00 9e-30 Growth-regulating factor 3 OS Arabidopsis thaliana GN GRF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY3|GRF6_ORYSJ 65 179 + 115 Gaps:13 17.91 603 56.48 2e-28 Growth-regulating factor 6 OS Oryza sativa subsp. japonica GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 65 179 + 115 Gaps:17 19.81 535 59.43 3e-28 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L8A7|GRF4_ARATH 64 179 + 116 Gaps:3 29.74 380 54.87 5e-27 Growth-regulating factor 4 OS Arabidopsis thaliana GN GRF4 PE 2 SV 1
rpsblast_cdd gnl|CDD|192171 136 180 + 45 none 97.83 46 73.33 2e-16 pfam08879 WRC WRC. The WRC domain named after the conserved Trp-Arg-Cys motif contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding.
rpsblast_cdd gnl|CDD|204086 65 99 + 35 none 94.59 37 60.00 8e-10 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 64 99 36 PS51666 none QLQ domain profile. IPR014978
SMART 63 99 37 SM00951 none none IPR014978
ProSiteProfiles 136 180 45 PS51667 none WRC domain profile. IPR014977
Pfam 136 180 45 PF08879 none WRC IPR014977
Pfam 65 99 35 PF08880 none QLQ IPR014978
PANTHER 1 191 191 PTHR31602 none none IPR031137

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting