Protein : Qrob_P0769040.2 Q. robur
Protein Identifier  ? Qrob_P0769040.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14799 - pre-rRNA-processing protein TSR1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 352  
Kegg Orthology  K14799
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034372 1 331 + 331 Gaps:9 42.73 798 73.61 6e-121 Pre-rRNA-processing protein TSR1 isoform 1
blastp_kegg lcl|vvi:100259903 1 331 + 331 Gaps:5 42.32 801 73.75 3e-119 pre-rRNA-processing protein TSR1 homolog-like
blastp_kegg lcl|cit:102610155 1 331 + 331 Gaps:1 42.14 795 72.54 9e-117 pre-rRNA-processing protein TSR1 homolog
blastp_kegg lcl|cic:CICLE_v10000330mg 1 331 + 331 Gaps:1 42.14 795 72.54 9e-117 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001600mg 1 331 + 331 Gaps:4 42.01 795 71.86 2e-112 hypothetical protein
blastp_kegg lcl|pmum:103342198 1 331 + 331 Gaps:4 42.01 795 71.26 8e-112 pre-rRNA-processing protein TSR1 homolog
blastp_kegg lcl|pxb:103938565 1 331 + 331 Gaps:4 41.72 791 70.61 1e-111 pre-rRNA-processing protein TSR1 homolog
blastp_kegg lcl|mdm:103437982 1 331 + 331 Gaps:4 41.72 791 71.21 2e-111 pre-rRNA-processing protein TSR1 homolog
blastp_kegg lcl|rcu:RCOM_1600880 1 331 + 331 Gaps:1 42.30 792 70.15 2e-108 ribosome biogenesis protein tsr1 putative
blastp_kegg lcl|pxb:103929592 1 331 + 331 Gaps:4 41.72 791 70.91 3e-106 pre-rRNA-processing protein TSR1 homolog
blastp_uniprot_sprot sp|Q5R434|TSR1_PONAB 88 272 + 185 Gaps:17 23.60 805 40.53 2e-32 Pre-rRNA-processing protein TSR1 homolog OS Pongo abelii GN TSR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5SWD9|TSR1_MOUSE 97 261 + 165 Gaps:15 21.92 803 41.48 5e-32 Pre-rRNA-processing protein TSR1 homolog OS Mus musculus GN Tsr1 PE 2 SV 1
blastp_uniprot_sprot sp|Q2NL82|TSR1_HUMAN 88 272 + 185 Gaps:17 23.63 804 40.53 7e-32 Pre-rRNA-processing protein TSR1 homolog OS Homo sapiens GN TSR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5XGY1|TSR1_XENLA 97 246 + 150 Gaps:16 19.88 815 40.74 3e-29 Pre-rRNA-processing protein TSR1 homolog OS Xenopus laevis GN tsr1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VP47|TSR1_DROME 90 247 + 158 Gaps:10 18.43 814 43.33 1e-23 Pre-rRNA-processing protein TSR1 homolog OS Drosophila melanogaster GN CG7338 PE 1 SV 1
blastp_uniprot_sprot sp|Q19329|TSR1_CAEEL 103 246 + 144 Gaps:20 15.80 785 43.55 5e-20 Pre-rRNA-processing protein TSR1 homolog OS Caenorhabditis elegans GN tag-151 PE 3 SV 1
blastp_uniprot_sprot sp|Q61WR2|TSR1_CAEBR 103 246 + 144 Gaps:25 15.86 788 42.40 3e-19 Pre-rRNA-processing protein TSR1 homolog OS Caenorhabditis briggsae GN tag-151 PE 3 SV 1
blastp_uniprot_sprot sp|Q54YA7|TSR1_DICDI 97 246 + 150 Gaps:26 18.16 826 32.67 1e-14 Pre-rRNA-processing protein TSR1 homolog OS Dictyostelium discoideum GN tsr1 PE 3 SV 1
blastp_uniprot_sprot sp|Q07381|TSR1_YEAST 96 258 + 163 Gaps:31 20.81 788 29.88 4e-07 Ribosome biogenesis protein TSR1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TSR1 PE 1 SV 1
rpsblast_cdd gnl|CDD|129021 96 160 + 65 Gaps:1 79.52 83 42.42 7e-18 smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU.
rpsblast_cdd gnl|CDD|191946 96 160 + 65 Gaps:1 79.01 81 43.75 2e-15 pfam08142 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU.
rpsblast_cdd gnl|CDD|34776 96 298 + 203 Gaps:34 26.40 769 27.59 1e-13 COG5177 COG5177 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37191 96 331 + 236 Gaps:20 29.71 754 33.48 1e-28 KOG1980 KOG1980 KOG1980 Uncharacterized conserved protein [Function unknown].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 95 160 66 PF08142 none AARP2CN (NUC121) domain IPR012948
SMART 82 160 79 SM00785 none AARP2CN (NUC121) domain IPR012948
PANTHER 83 331 249 PTHR12858 none none none
PANTHER 83 331 249 PTHR12858:SF1 none none none
Coils 306 327 22 Coil none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting