Protein : Qrob_P0766540.2 Q. robur
Protein Identifier  ? Qrob_P0766540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PF12767 - Transcriptional regulator of RNA polII, SAGA, subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 422  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0070461 SAGA-type complex A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006316mg 1 421 + 421 Gaps:4 100.00 417 73.14 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_036818 1 421 + 421 Gaps:3 100.00 420 72.62 0.0 hypothetical protein
blastp_kegg lcl|fve:101308044 1 421 + 421 Gaps:1 100.00 420 70.95 0.0 uncharacterized protein LOC101308044
blastp_kegg lcl|pop:POPTR_0018s03730g 1 421 + 421 Gaps:6 100.00 415 71.33 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320096 1 421 + 421 Gaps:6 100.00 419 72.55 0.0 uncharacterized LOC103320096
blastp_kegg lcl|rcu:RCOM_0918500 1 421 + 421 Gaps:4 100.00 419 69.93 0.0 hypothetical protein
blastp_kegg lcl|cit:102628352 1 421 + 421 Gaps:5 100.00 420 68.57 0.0 uncharacterized LOC102628352
blastp_kegg lcl|cic:CICLE_v10008417mg 1 421 + 421 Gaps:5 100.00 420 68.57 0.0 hypothetical protein
blastp_kegg lcl|gmx:100803746 1 421 + 421 Gaps:5 100.00 420 68.81 0.0 uncharacterized LOC100803746
blastp_kegg lcl|pvu:PHAVU_009G101100g 1 421 + 421 Gaps:2 100.00 419 68.26 0.0 hypothetical protein
rpsblast_cdd gnl|CDD|205064 1 335 + 335 Gaps:25 100.00 210 46.19 2e-26 pfam12767 SAGA-Tad1 Transcriptional regulator of RNA polII SAGA subunit. The yeast SAGA complex is a multifunctional coactivator that regulates transcription by RNA polymerase II. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA. The complex can also be conceived of as consisting of two histone-fold-containing core subunits and this family is one of these. As a family it is likely to carry binding regions for interactions with a number of the other components of the complex.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 335 335 PF12767 none Transcriptional regulator of RNA polII, SAGA, subunit IPR024738
PANTHER 98 160 63 PTHR21277 none none none
PANTHER 4 81 78 PTHR21277:SF7 none none none
PANTHER 98 160 63 PTHR21277:SF7 none none none
PANTHER 244 421 178 PTHR21277:SF7 none none none
PANTHER 4 81 78 PTHR21277 none none none
PANTHER 244 421 178 PTHR21277 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting